Analysis of interatomic Contacts of Structural Units in PDB entry:
6PMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PMH entry

There are 2 chains in PDB entry 6PMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 3GLY 130
A
 GLY 132PHE 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 6PMH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 10Right-handed 310
Helix 2
AA2
A
21 34Right-handed alpha
Helix 3
AA3
A
48 52Right-handed 310
Helix 4
AA4
A
67 76Right-handed alpha
Helix 5
AA5
A
90 97Right-handed alpha
Helix 6
AA6
A
97 106Right-handed alpha
Helix 7
AA7
A
106 120Right-handed alpha
Helix 8
AA8
A
153 174Right-handed alpha
Helix 9
AA9
A
197 208Right-handed alpha
Helix 10
AB1
A
227 240Right-handed alpha
Helix 11
AB2
A
241 244Right-handed 310
Helix 12
AB3
A
258 269Right-handed alpha
Helix 13
AB4
A
293 301Right-handed alpha
Helix 14
AB5
A
307 322Right-handed alpha
Helix 15
AB6
A
322 330Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6PMH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
37 42parallel
Strand 3
A
13 17parallel
Strand 4
A
81 84parallel
Strand 5
A
123 129parallel
Strand 6
A
177 182parallel
Strand 7
A
247 250parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
225 226parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
212 215first strand
Strand 2
A
275 278parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 222first strand
Strand 2
A
256 257anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il