Analysis of interatomic Contacts of Structural Units in PDB entry:
6PMJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PMJ entry

There are 9 chains in PDB entry 6PMJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 6	ARG 235
B	THR 6	ASP 233
C	TYR 3	GLU 1342
D	GLU 15	GLY 1376
E	ALA 2	LEU 80
F	ASN 2	LEU 240
1	A 35	G 88
2	C 1	T 54
3	A 2	C 3

There are114 helices in PDB entry 6PMJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	50	Right-handed alpha
Helix 2	AA2	A	77	86	Right-handed alpha
Helix 3	AA3	A	154	162	Right-handed alpha
Helix 4	AA4	A	212	233	Right-handed alpha
Helix 5	AA5	B	35	50	Right-handed alpha
Helix 6	AA6	B	77	85	Right-handed alpha
Helix 7	AA7	B	154	162	Right-handed alpha
Helix 8	AA8	B	212	229	Right-handed alpha
Helix 9	AA9	C	4	10	Right-handed alpha
Helix 10	AB1	C	28	40	Right-handed alpha
Helix 11	AB2	C	48	56	Right-handed alpha
Helix 12	AB3	C	81	89	Right-handed alpha
Helix 13	AB4	C	206	213	Right-handed alpha
Helix 14	AB5	C	216	225	Right-handed alpha
Helix 15	AB6	C	242	246	Right-handed 310
Helix 16	AB7	C	270	280	Right-handed alpha
Helix 17	AB8	C	288	292	Right-handed 310
Helix 18	AB9	C	319	328	Right-handed alpha
Helix 19	AC1	C	345	354	Right-handed alpha
Helix 20	AC2	C	358	371	Right-handed alpha
Helix 21	AC3	C	377	391	Right-handed alpha
Helix 22	AC4	C	399	410	Right-handed alpha
Helix 23	AC5	C	421	438	Right-handed alpha
Helix 24	AC6	C	447	449	Right-handed 310
Helix 25	AC7	C	455	480	Right-handed alpha
Helix 26	AC8	C	488	493	Right-handed 310
Helix 27	AC9	C	495	509	Right-handed alpha
Helix 28	AD1	C	519	527	Right-handed alpha
Helix 29	AD2	C	551	555	Right-handed 310
Helix 30	AD3	C	609	613	Right-handed 310
Helix 31	AD4	C	662	667	Right-handed alpha
Helix 32	AD5	C	670	674	Right-handed 310
Helix 33	AD6	C	675	687	Right-handed alpha
Helix 34	AD7	C	704	712	Right-handed alpha
Helix 35	AD8	C	820	826	Right-handed alpha
Helix 36	AD9	C	858	863	Right-handed alpha
Helix 37	AE1	C	896	907	Right-handed alpha
Helix 38	AE2	C	942	981	Right-handed alpha
Helix 39	AE3	C	1007	1038	Right-handed alpha
Helix 40	AE4	C	1081	1085	Right-handed 310
Helix 41	AE5	C	1099	1103	Right-handed 310
Helix 42	AE6	C	1109	1135	Right-handed alpha
Helix 43	AE7	C	1137	1150	Right-handed alpha
Helix 44	AE8	C	1165	1177	Right-handed alpha
Helix 45	AE9	C	1191	1202	Right-handed alpha
Helix 46	AF1	C	1238	1243	Right-handed alpha
Helix 47	AF2	C	1261	1265	Right-handed 310
Helix 48	AF3	C	1271	1282	Right-handed alpha
Helix 49	AF4	C	1283	1293	Right-handed alpha
Helix 50	AF5	C	1297	1310	Right-handed alpha
Helix 51	AF6	C	1320	1333	Right-handed alpha
Helix 52	AF7	D	26	34	Right-handed alpha
Helix 53	AF8	D	58	63	Right-handed alpha
Helix 54	AF9	D	124	129	Right-handed alpha
Helix 55	AG1	D	131	140	Right-handed alpha
Helix 56	AG2	D	163	173	Right-handed alpha
Helix 57	AG3	D	181	192	Right-handed alpha
Helix 58	AG4	D	194	206	Right-handed alpha
Helix 59	AG5	D	210	231	Right-handed alpha
Helix 60	AG6	D	233	236	Right-handed 310
Helix 61	AG7	D	246	250	Right-handed 310
Helix 62	AG8	D	263	284	Right-handed alpha
Helix 63	AG9	D	288	308	Right-handed alpha
Helix 64	AH1	D	327	331	Right-handed 310
Helix 65	AH2	D	370	377	Right-handed alpha
Helix 66	AH3	D	377	389	Right-handed alpha
Helix 67	AH4	D	393	404	Right-handed alpha
Helix 68	AH5	D	405	417	Right-handed alpha
Helix 69	AH6	D	430	432	Right-handed 310
Helix 70	AH7	D	450	455	Right-handed 310
Helix 71	AH8	D	473	483	Right-handed alpha
Helix 72	AH9	D	505	514	Right-handed alpha
Helix 73	AI1	D	529	538	Right-handed alpha
Helix 74	AI2	D	573	581	Right-handed alpha
Helix 75	AI3	D	589	593	Right-handed 310
Helix 76	AI4	D	597	613	Right-handed alpha
Helix 77	AI5	D	614	636	Right-handed alpha
Helix 78	AI6	D	640	644	Right-handed 310
Helix 79	AI7	D	650	671	Right-handed alpha
Helix 80	AI8	D	675	702	Right-handed alpha
Helix 81	AI9	D	720	729	Right-handed alpha
Helix 82	AJ1	D	733	742	Right-handed alpha
Helix 83	AJ2	D	768	788	Right-handed alpha
Helix 84	AJ3	D	789	804	Right-handed alpha
Helix 85	AJ4	D	834	840	Right-handed alpha
Helix 86	AJ5	D	865	874	Right-handed alpha
Helix 87	AJ6	D	895	900	Right-handed alpha
Helix 88	AJ7	D	915	931	Right-handed alpha
Helix 89	AJ8	D	1138	1146	Right-handed alpha
Helix 90	AJ9	D	1216	1224	Right-handed alpha
Helix 91	AK1	D	1225	1244	Right-handed alpha
Helix 92	AK2	D	1250	1261	Right-handed alpha
Helix 93	AK3	D	1279	1288	Right-handed alpha
Helix 94	AK4	D	1308	1315	Right-handed alpha
Helix 95	AK5	D	1321	1326	Right-handed alpha
Helix 96	AK6	D	1327	1337	Right-handed alpha
Helix 97	AK7	D	1347	1354	Right-handed alpha
Helix 98	AK8	D	1362	1375	Right-handed alpha
Helix 99	AK9	E	6	14	Right-handed alpha
Helix 100	AL1	E	16	32	Right-handed alpha
Helix 101	AL2	E	45	56	Right-handed alpha
Helix 102	AL3	E	60	80	Right-handed alpha
Helix 103	AL4	F	7	20	Right-handed alpha
Helix 104	AL5	F	20	29	Right-handed alpha
Helix 105	AL6	F	36	41	Right-handed alpha
Helix 106	AL7	F	41	58	Right-handed alpha
Helix 107	AL8	F	66	87	Right-handed alpha
Helix 108	AL9	F	90	112	Right-handed alpha
Helix 109	AM1	F	117	124	Right-handed alpha
Helix 110	AM2	F	127	139	Right-handed alpha
Helix 111	AM3	F	168	187	Right-handed alpha
Helix 112	AM4	F	190	202	Right-handed alpha
Helix 113	AM5	F	207	215	Right-handed alpha
Helix 114	AM6	F	218	233	Right-handed alpha

There are 50 sheets in PDB entry 6PMJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	24	31	anti-parallel
Strand 3	A	17	18	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	13	first strand
Strand 2	A	24	31	anti-parallel
Strand 3	A	199	207	anti-parallel
Strand 4	A	180	188	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	105	first strand
Strand 2	A	139	149	anti-parallel
Strand 3	A	53	61	anti-parallel
Strand 4	A	171	172	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	121	123	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	110	first strand
Strand 2	A	131	133	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	175	176	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	26	first strand
Strand 2	B	198	207	anti-parallel
Strand 3	B	180	190	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	104	first strand
Strand 2	B	140	150	anti-parallel
Strand 3	B	52	61	anti-parallel
Strand 4	B	170	172	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1182	1183	parallel
Strand 3	C	700	701	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	67	first strand
Strand 2	C	93	104	anti-parallel
Strand 3	C	70	75	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	67	first strand
Strand 2	C	93	104	anti-parallel
Strand 3	C	117	128	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	142	144	anti-parallel
Strand 3	C	513	514	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	454	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	530	531	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	161	first strand
Strand 2	C	170	177	anti-parallel
Strand 3	C	184	187	anti-parallel
Strand 4	C	195	197	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	287	first strand
Strand 2	C	236	240	anti-parallel
Strand 3	C	227	233	anti-parallel
Strand 4	C	333	336	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	249	250	first strand
Strand 2	C	268	269	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	256	first strand
Strand 2	C	261	263	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	302	first strand
Strand 2	C	309	311	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	604	606	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	598	599	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	652	653	anti-parallel
Strand 4	C	616	617	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	634	638	first strand
Strand 2	C	641	645	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	750	752	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	722	727	anti-parallel
Strand 4	C	776	777	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	768	769	first strand
Strand 2	C	784	785	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	790	first strand
Strand 2	C	793	794	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	798	803	first strand
Strand 2	C	1225	1232	anti-parallel
Strand 3	C	1209	1210	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1076	1079	first strand
Strand 2	C	816	818	parallel
Strand 3	C	1096	1097	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	832	first strand
Strand 2	C	1056	1058	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	835	841	first strand
Strand 2	C	1046	1053	anti-parallel
Strand 3	C	931	935	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	849	850	first strand
Strand 2	C	886	889	anti-parallel
Strand 3	C	913	915	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	876	878	first strand
Strand 2	C	925	927	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	884	first strand
Strand 2	C	918	919	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	357	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	421	424	anti-parallel
Strand 5	D	434	442	anti-parallel
Strand 6	D	365	369	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	357	anti-parallel
Strand 3	D	447	449	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1268	1270	first strand
Strand 2	D	345	347	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1340	first strand
Strand 2	D	19	24	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	112	first strand
Strand 2	D	238	244	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	144	146	anti-parallel
Strand 3	D	178	179	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	253	254	first strand
Strand 2	D	260	261	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	548	552	first strand
Strand 2	D	568	572	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	555	556	first strand
Strand 2	D	564	565	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	901	902	first strand
Strand 2	D	907	908	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	949	952	first strand
Strand 2	D	1015	1019	anti-parallel
Strand 3	D	1002	1003	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	991	996	first strand
Strand 2	D	981	985	anti-parallel
Strand 3	D	956	958	anti-parallel
Strand 4	D	1010	1011	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	965	967	first strand
Strand 2	D	973	975	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1025	1029	first strand
Strand 2	D	1119	1124	anti-parallel
Strand 3	D	1106	1107	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1079	1081	first strand
Strand 2	D	1033	1036	anti-parallel
Strand 3	D	1114	1115	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1047	1049	first strand
Strand 2	D	1058	1060	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1177	1178	first strand
Strand 2	D	1161	1163	anti-parallel
Strand 3	D	1203	1204	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PMJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PMJ