Analysis of interatomic Contacts of Structural Units in PDB entry:
6PMP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PMP entry

There are 3 chains in PDB entry 6PMP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1303	GLN 2091
B	PHE 1303	GLU 2096
C	PHE 1303	LEU 1328

There are110 helices in PDB entry 6PMP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1306	1319	Right-handed alpha
Helix 2	AA2	A	1323	1335	Right-handed alpha
Helix 3	AA3	A	1337	1342	Right-handed alpha
Helix 4	AA4	A	1348	1357	Right-handed alpha
Helix 5	AA5	A	1364	1368	Right-handed 310
Helix 6	AA6	A	1372	1376	Right-handed 310
Helix 7	AA7	A	1378	1380	Right-handed 310
Helix 8	AA8	A	1403	1413	Right-handed alpha
Helix 9	AA9	A	1443	1454	Right-handed alpha
Helix 10	AB1	A	1471	1487	Right-handed alpha
Helix 11	AB2	A	1488	1490	Right-handed 310
Helix 12	AB3	A	1496	1501	Right-handed 310
Helix 13	AB4	A	1528	1542	Right-handed alpha
Helix 14	AB5	A	1643	1648	Right-handed alpha
Helix 15	AB6	A	1731	1733	Right-handed 310
Helix 16	AB7	A	1741	1751	Right-handed alpha
Helix 17	AB8	A	1751	1762	Right-handed alpha
Helix 18	AB9	A	1780	1786	Right-handed alpha
Helix 19	AC1	A	1799	1809	Right-handed alpha
Helix 20	AC2	A	1810	1815	Right-handed 310
Helix 21	AC3	A	1821	1825	Right-handed 310
Helix 22	AC4	A	1909	1912	Right-handed 310
Helix 23	AC5	A	1936	1938	Right-handed 310
Helix 24	AC6	A	1978	1982	Right-handed alpha
Helix 25	AC7	A	1984	1991	Right-handed alpha
Helix 26	AC8	A	2016	2026	Right-handed alpha
Helix 27	AC9	A	2068	2074	Right-handed alpha
Helix 28	AD1	B	1306	1319	Right-handed alpha
Helix 29	AD2	B	1323	1335	Right-handed alpha
Helix 30	AD3	B	1337	1342	Right-handed alpha
Helix 31	AD4	B	1348	1357	Right-handed alpha
Helix 32	AD5	B	1364	1368	Right-handed 310
Helix 33	AD6	B	1372	1376	Right-handed 310
Helix 34	AD7	B	1378	1380	Right-handed 310
Helix 35	AD8	B	1403	1413	Right-handed alpha
Helix 36	AD9	B	1443	1454	Right-handed alpha
Helix 37	AE1	B	1471	1487	Right-handed alpha
Helix 38	AE2	B	1488	1490	Right-handed 310
Helix 39	AE3	B	1496	1500	Right-handed 310
Helix 40	AE4	B	1528	1542	Right-handed alpha
Helix 41	AE5	B	1643	1648	Right-handed alpha
Helix 42	AE6	B	1731	1733	Right-handed 310
Helix 43	AE7	B	1741	1751	Right-handed alpha
Helix 44	AE8	B	1751	1762	Right-handed alpha
Helix 45	AE9	B	1780	1786	Right-handed alpha
Helix 46	AF1	B	1799	1809	Right-handed alpha
Helix 47	AF2	B	1810	1815	Right-handed 310
Helix 48	AF3	B	1821	1825	Right-handed 310
Helix 49	AF4	B	1909	1912	Right-handed 310
Helix 50	AF5	B	1936	1938	Right-handed 310
Helix 51	AF6	B	1977	1982	Right-handed alpha
Helix 52	AF7	B	1984	1991	Right-handed alpha
Helix 53	AF8	B	2016	2027	Right-handed alpha
Helix 54	AF9	B	2068	2074	Right-handed alpha
Helix 55	AG1	C	1306	1319	Right-handed alpha
Helix 56	AG2	C	1323	1335	Right-handed alpha
Helix 57	AG3	C	1337	1342	Right-handed alpha
Helix 58	AG4	C	1348	1357	Right-handed alpha
Helix 59	AG5	C	1364	1368	Right-handed 310
Helix 60	AG6	C	1372	1376	Right-handed 310
Helix 61	AG7	C	1378	1380	Right-handed 310
Helix 62	AG8	C	1403	1413	Right-handed alpha
Helix 63	AG9	C	1443	1454	Right-handed alpha
Helix 64	AH1	C	1471	1487	Right-handed alpha
Helix 65	AH2	C	1488	1490	Right-handed 310
Helix 66	AH3	C	1496	1500	Right-handed 310
Helix 67	AH4	C	1528	1542	Right-handed alpha
Helix 68	AH5	C	1643	1648	Right-handed alpha
Helix 69	AH6	C	1731	1733	Right-handed 310
Helix 70	AH7	C	1741	1751	Right-handed alpha
Helix 71	AH8	C	1751	1762	Right-handed alpha
Helix 72	AH9	C	1780	1786	Right-handed alpha
Helix 73	AI1	C	1799	1809	Right-handed alpha
Helix 74	AI2	C	1810	1815	Right-handed 310
Helix 75	AI3	C	1821	1825	Right-handed 310
Helix 76	AI4	C	1878	1882	Right-handed 310
Helix 77	AI5	C	1909	1912	Right-handed 310
Helix 78	AI6	C	1936	1938	Right-handed 310
Helix 79	AI7	C	1977	1982	Right-handed alpha
Helix 80	AI8	C	1984	1991	Right-handed alpha
Helix 81	AI9	C	2016	2026	Right-handed alpha
Helix 82	AJ1	C	2068	2074	Right-handed alpha
Helix 83	AJ2	D	1306	1319	Right-handed alpha
Helix 84	AJ3	D	1323	1335	Right-handed alpha
Helix 85	AJ4	D	1337	1342	Right-handed alpha
Helix 86	AJ5	D	1348	1357	Right-handed alpha
Helix 87	AJ6	D	1364	1368	Right-handed 310
Helix 88	AJ7	D	1372	1376	Right-handed 310
Helix 89	AJ8	D	1378	1380	Right-handed 310
Helix 90	AJ9	D	1403	1413	Right-handed alpha
Helix 91	AK1	D	1443	1454	Right-handed alpha
Helix 92	AK2	D	1471	1487	Right-handed alpha
Helix 93	AK3	D	1488	1490	Right-handed 310
Helix 94	AK4	D	1496	1501	Right-handed 310
Helix 95	AK5	D	1528	1542	Right-handed alpha
Helix 96	AK6	D	1643	1648	Right-handed alpha
Helix 97	AK7	D	1731	1733	Right-handed 310
Helix 98	AK8	D	1741	1751	Right-handed alpha
Helix 99	AK9	D	1751	1762	Right-handed alpha
Helix 100	AL1	D	1780	1786	Right-handed alpha
Helix 101	AL2	D	1799	1809	Right-handed alpha
Helix 102	AL3	D	1810	1815	Right-handed 310
Helix 103	AL4	D	1821	1825	Right-handed 310
Helix 104	AL5	D	1878	1882	Right-handed 310
Helix 105	AL6	D	1909	1912	Right-handed 310
Helix 106	AL7	D	1936	1938	Right-handed 310
Helix 107	AL8	D	1977	1982	Right-handed alpha
Helix 108	AL9	D	1984	1991	Right-handed alpha
Helix 109	AM1	D	2016	2026	Right-handed alpha
Helix 110	AM2	D	2068	2074	Right-handed alpha

There are 28 sheets in PDB entry 6PMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1304	1305	first strand
Strand 2	A	1346	1347	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1382	1384	first strand
Strand 2	A	1817	1819	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1441	1442	first strand
Strand 2	A	1430	1431	anti-parallel
Strand 3	A	1416	1422	anti-parallel
Strand 4	A	1462	1468	parallel
Strand 5	A	1516	1521	parallel
Strand 6	A	1653	1655	parallel
Strand 7	A	1735	1740	parallel
Strand 8	A	1763	1767	parallel
Strand 9	A	1790	1793	parallel
Strand 10	A	1386	1387	parallel
Strand 11	A	1416	1422	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1845	1846	first strand
Strand 2	A	1976	1977	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1898	1907	first strand
Strand 2	A	1848	1858	anti-parallel
Strand 3	A	1954	1967	anti-parallel
Strand 4	A	1943	1948	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1883	1886	first strand
Strand 2	A	1869	1876	anti-parallel
Strand 3	A	1914	1921	anti-parallel
Strand 4	A	1926	1934	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2006	2012	first strand
Strand 2	A	1992	1998	anti-parallel
Strand 3	A	2082	2090	parallel
Strand 4	A	2038	2046	anti-parallel
Strand 5	A	2059	2062	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1304	1305	first strand
Strand 2	B	1346	1347	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1382	1384	first strand
Strand 2	B	1817	1819	anti-parallel

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There are 11 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1441	1442	first strand
Strand 2	B	1430	1431	anti-parallel
Strand 3	B	1416	1422	anti-parallel
Strand 4	B	1462	1468	parallel
Strand 5	B	1516	1521	parallel
Strand 6	B	1653	1655	parallel
Strand 7	B	1735	1740	parallel
Strand 8	B	1763	1767	parallel
Strand 9	B	1790	1793	parallel
Strand 10	B	1386	1387	parallel
Strand 11	B	1416	1422	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1898	1907	first strand
Strand 2	B	1848	1858	anti-parallel
Strand 3	B	1954	1967	anti-parallel
Strand 4	B	1943	1948	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1883	1886	first strand
Strand 2	B	1869	1876	anti-parallel
Strand 3	B	1914	1921	anti-parallel
Strand 4	B	1926	1934	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1992	1998	first strand
Strand 2	B	2006	2012	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2059	2062	first strand
Strand 2	B	2038	2046	anti-parallel
Strand 3	B	2082	2090	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1304	1305	first strand
Strand 2	C	1346	1347	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1382	1384	first strand
Strand 2	C	1817	1819	anti-parallel

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There are 11 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1441	1442	first strand
Strand 2	C	1430	1431	anti-parallel
Strand 3	C	1416	1422	anti-parallel
Strand 4	C	1462	1468	parallel
Strand 5	C	1516	1521	parallel
Strand 6	C	1653	1655	parallel
Strand 7	C	1735	1740	parallel
Strand 8	C	1763	1767	parallel
Strand 9	C	1790	1793	parallel
Strand 10	C	1386	1387	parallel
Strand 11	C	1416	1422	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1621	1623	first strand
Strand 2	C	1628	1630	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1898	1907	first strand
Strand 2	C	1848	1858	anti-parallel
Strand 3	C	1954	1967	anti-parallel
Strand 4	C	1943	1948	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1883	1886	first strand
Strand 2	C	1869	1876	anti-parallel
Strand 3	C	1914	1921	anti-parallel
Strand 4	C	1926	1934	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2006	2012	first strand
Strand 2	C	1992	1998	anti-parallel
Strand 3	C	2082	2089	parallel
Strand 4	C	2039	2046	anti-parallel
Strand 5	C	2059	2062	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1304	1305	first strand
Strand 2	D	1346	1347	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1382	1384	first strand
Strand 2	D	1817	1819	anti-parallel

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There are 11 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1441	1442	first strand
Strand 2	D	1430	1431	anti-parallel
Strand 3	D	1416	1422	anti-parallel
Strand 4	D	1462	1468	parallel
Strand 5	D	1516	1520	parallel
Strand 6	D	1653	1655	parallel
Strand 7	D	1735	1740	parallel
Strand 8	D	1763	1767	parallel
Strand 9	D	1790	1793	parallel
Strand 10	D	1386	1387	parallel
Strand 11	D	1416	1422	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1898	1907	first strand
Strand 2	D	1848	1858	anti-parallel
Strand 3	D	1954	1967	anti-parallel
Strand 4	D	1943	1948	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1883	1886	first strand
Strand 2	D	1869	1876	anti-parallel
Strand 3	D	1914	1921	anti-parallel
Strand 4	D	1926	1934	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1992	1998	first strand
Strand 2	D	2006	2012	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2059	2062	first strand
Strand 2	D	2040	2046	anti-parallel
Strand 3	D	2082	2088	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PMP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PMP