Analysis of interatomic Contacts of Structural Units in PDB entry:
6PMT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PMT entry

There is 1 chain in PDB entry 6PMT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 54ALA 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6PMT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
102 107Right-handed alpha
Helix 2
AA2
A
112 114Right-handed 310
Helix 3
AA3
A
119 123Right-handed 310
Helix 4
AA4
A
130 138Right-handed alpha
Helix 5
AA5
A
162 183Right-handed alpha
Helix 6
AA6
A
198 212Right-handed alpha
Helix 7
AA7
A
222 230Right-handed alpha
Helix 8
AA8
A
231 235Right-handed 310
Helix 9
AA9
A
274 295Right-handed alpha
Helix 10
AB1
A
297 300Right-handed 310
Helix 11
AB2
A
301 319Right-handed alpha
Helix 12
AB3
A
348 361Right-handed alpha
Helix 13
AB4
A
362 373Right-handed alpha
Helix 14
AB5
A
376 380Right-handed 310
Helix 15
AB6
A
387 391Right-handed 310
Helix 16
AB7
A
392 404Right-handed alpha
Helix 17
AB8
A
415 429Right-handed alpha
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There are 6 sheets in PDB entry 6PMT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 77first strand
Strand 2
A
64 71anti-parallel
Strand 3
A
87 88anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 77first strand
Strand 2
A
64 71anti-parallel
Strand 3
A
55 60anti-parallel
Strand 4
A
188 193parallel
Strand 5
A
215 221parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 101first strand
Strand 2
A
91 93anti-parallel
Strand 3
A
116 117anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 146first strand
Strand 2
A
152 156anti-parallel
Strand 3
A
159 161anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 270first strand
Strand 2
A
250 258anti-parallel
Strand 3
A
238 245anti-parallel
Strand 4
A
382 386parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 335first strand
Strand 2
A
338 347anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il