Analysis of interatomic Contacts of Structural Units in PDB entry:
6PMU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PMU entry

There are 2 chains in PDB entry 6PMU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5TYR 318
B
 SER 0PRO 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6PMU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 20Right-handed 310
Helix 2
AA2
A
44 46Right-handed 310
Helix 3
AA3
A
51 66Right-handed alpha
Helix 4
AA4
A
81 95Right-handed alpha
Helix 5
AA5
A
107 110Right-handed 310
Helix 6
AA6
A
111 117Right-handed alpha
Helix 7
AA7
A
135 154Right-handed alpha
Helix 8
AA8
A
164 173Right-handed alpha
Helix 9
AA9
A
173 182Right-handed alpha
Helix 10
AB1
A
196 210Right-handed alpha
Helix 11
AB2
A
262 278Right-handed alpha
Helix 12
AB3
A
282 299Right-handed alpha
Helix 13
AB4
A
314 318Right-handed 310
Helix 14
AB5
B
15 20Right-handed 310
Helix 15
AB6
B
44 46Right-handed 310
Helix 16
AB7
B
51 66Right-handed alpha
Helix 17
AB8
B
81 95Right-handed alpha
Helix 18
AB9
B
107 110Right-handed 310
Helix 19
AC1
B
111 117Right-handed alpha
Helix 20
AC2
B
135 154Right-handed alpha
Helix 21
AC3
B
159 163Right-handed 310
Helix 22
AC4
B
164 173Right-handed alpha
Helix 23
AC5
B
173 182Right-handed alpha
Helix 24
AC6
B
196 210Right-handed alpha
Helix 25
AC7
B
262 278Right-handed alpha
Helix 26
AC8
B
282 299Right-handed alpha
Helix 27
AC9
B
314 318Right-handed 310
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There are 4 sheets in PDB entry 6PMU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 13first strand
Strand 2
B
25 27parallel
Strand 3
B
37 42anti-parallel
Strand 4
B
306 311parallel
Strand 5
B
188 192parallel
Strand 6
B
214 219parallel
Strand 7
B
258 260parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 261first strand
Strand 2
A
214 220parallel
Strand 3
A
188 192parallel
Strand 4
A
306 311parallel
Strand 5
A
37 42parallel
Strand 6
A
25 27anti-parallel
Strand 7
B
12 13parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 124first strand
Strand 2
A
98 103parallel
Strand 3
A
75 78parallel
Strand 4
A
156 157parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 124first strand
Strand 2
B
98 103parallel
Strand 3
B
75 78parallel
Strand 4
B
156 157parallel
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