Analysis of interatomic Contacts of Structural Units in PDB entry:
6PMX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PMX entry

There are 2 chains in PDB entry 6PMX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 299	TRP 716
B	ARG 299	GLY 718

There are 37 helices in PDB entry 6PMX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	315	320	Right-handed 310
Helix 2	AA2	A	350	369	Right-handed alpha
Helix 3	AA3	A	374	392	Right-handed alpha
Helix 4	AA4	A	397	411	Right-handed alpha
Helix 5	AA5	A	417	424	Right-handed 310
Helix 6	AA6	A	434	451	Right-handed alpha
Helix 7	AA7	A	452	454	Right-handed 310
Helix 8	AA8	A	498	507	Right-handed alpha
Helix 9	AA9	A	537	541	Right-handed 310
Helix 10	AB1	A	551	558	Right-handed 310
Helix 11	AB2	A	589	595	Right-handed alpha
Helix 12	AB3	A	606	614	Right-handed alpha
Helix 13	AB4	A	620	623	Right-handed 310
Helix 14	AB5	A	624	644	Right-handed alpha
Helix 15	AB6	A	650	669	Right-handed alpha
Helix 16	AB7	A	675	680	Right-handed alpha
Helix 17	AB8	A	684	693	Right-handed 310
Helix 18	AB9	A	709	714	Right-handed alpha
Helix 19	AC1	B	315	320	Right-handed 310
Helix 20	AC2	B	350	369	Right-handed alpha
Helix 21	AC3	B	374	392	Right-handed alpha
Helix 22	AC4	B	397	411	Right-handed alpha
Helix 23	AC5	B	417	421	Right-handed 310
Helix 24	AC6	B	434	451	Right-handed alpha
Helix 25	AC7	B	452	454	Right-handed 310
Helix 26	AC8	B	498	508	Right-handed alpha
Helix 27	AC9	B	537	541	Right-handed 310
Helix 28	AD1	B	551	558	Right-handed 310
Helix 29	AD2	B	590	595	Right-handed alpha
Helix 30	AD3	B	595	600	Right-handed alpha
Helix 31	AD4	B	606	614	Right-handed alpha
Helix 32	AD5	B	620	623	Right-handed 310
Helix 33	AD6	B	624	644	Right-handed alpha
Helix 34	AD7	B	650	670	Right-handed alpha
Helix 35	AD8	B	675	680	Right-handed alpha
Helix 36	AD9	B	684	688	Right-handed 310
Helix 37	AE1	B	709	714	Right-handed alpha

There are 13 sheets in PDB entry 6PMX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	304	first strand
Strand 2	A	311	313	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	428	first strand
Strand 2	A	458	461	parallel
Strand 3	A	584	585	anti-parallel
Strand 4	A	566	567	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	473	474	first strand
Strand 2	A	522	525	anti-parallel
Strand 3	A	532	534	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	486	first strand
Strand 2	A	492	494	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	543	545	first strand
Strand 2	A	560	562	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	577	579	first strand
Strand 2	A	571	574	anti-parallel
Strand 3	A	703	705	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	304	first strand
Strand 2	B	311	313	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	428	first strand
Strand 2	B	458	461	parallel
Strand 3	B	584	585	anti-parallel
Strand 4	B	566	567	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	474	first strand
Strand 2	B	522	525	anti-parallel
Strand 3	B	532	534	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	484	486	first strand
Strand 2	B	492	494	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	543	545	first strand
Strand 2	B	560	562	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	577	579	first strand
Strand 2	B	571	574	anti-parallel
Strand 3	B	703	705	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	588	589	first strand
Strand 2	B	648	649	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PMX

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PMX