Analysis of interatomic Contacts of Structural Units in PDB entry:
6PNN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PNN entry

There is 1 chain in PDB entry 6PNN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4LEU 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6PNN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 45Right-handed alpha
Helix 2
AA2
A
62 67Right-handed alpha
Helix 3
AA3
A
85 97Right-handed alpha
Helix 4
AA4
A
106 121Right-handed alpha
Helix 5
AA5
A
122 131Right-handed alpha
Helix 6
AA6
A
135 161Right-handed alpha
Helix 7
AA7
A
171 183Right-handed alpha
Helix 8
AA8
A
183 188Right-handed alpha
Helix 9
AA9
A
189 194Right-handed 310
Helix 10
AB1
A
196 208Right-handed alpha
Helix 11
AB2
A
209 216Right-handed alpha
Helix 12
AB3
A
218 231Right-handed alpha
Helix 13
AB4
A
235 239Right-handed 310
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There is 1 sheet (AA1) in PDB entry 6PNN.

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
24 28parallel
Strand 3
A
74 77anti-parallel
Strand 4
A
82 84anti-parallel
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