Analysis of interatomic Contacts of Structural Units in PDB entry:
6PNP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PNP entry

There are 2 chains in PDB entry 6PNP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 280PHE 487
B
 ASP 118SER 263
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 6PNP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
459 466Right-handed alpha
Helix 2
AA2
B
258 262Right-handed 310
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There are 3 sheets in PDB entry 6PNP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 287first strand
Strand 2
A
442 452anti-parallel
Strand 3
A
456 458anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 287first strand
Strand 2
A
442 452anti-parallel
Strand 3
A
305 313anti-parallel
Strand 4
A
368 375anti-parallel
Strand 5
A
378 398anti-parallel
Strand 6
A
401 408anti-parallel
Strand 7
B
122 129anti-parallel
Strand 8
B
133 143anti-parallel
Strand 9
B
148 159anti-parallel
Strand 10
B
219 232anti-parallel
Strand 11
B
194 207anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 473first strand
Strand 2
A
291 294anti-parallel
Strand 3
A
421 423anti-parallel
Strand 4
A
319 324anti-parallel
Strand 5
A
330 336anti-parallel
Strand 6
A
339 346anti-parallel
Strand 7
A
349 357anti-parallel
Strand 8
B
249 256anti-parallel
Strand 9
B
239 246anti-parallel
Strand 10
B
161 168anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il