Analysis of interatomic Contacts of Structural Units in PDB entry:
6PNQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PNQ entry

There are 2 chains in PDB entry 6PNQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 280GLU 484
B
 PHE 119TYR 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 6PNQ. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
459 466Right-handed alpha
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There are 3 sheets in PDB entry 6PNQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 287first strand
Strand 2
A
442 452anti-parallel
Strand 3
A
456 458anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 287first strand
Strand 2
A
442 452anti-parallel
Strand 3
A
305 314anti-parallel
Strand 4
A
368 375anti-parallel
Strand 5
A
384 398anti-parallel
Strand 6
A
401 408anti-parallel
Strand 7
B
122 129anti-parallel
Strand 8
B
133 143anti-parallel
Strand 9
B
148 159anti-parallel
Strand 10
B
218 232anti-parallel
Strand 11
B
194 208anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
470 473first strand
Strand 2
A
291 294anti-parallel
Strand 3
A
421 423anti-parallel
Strand 4
A
319 324anti-parallel
Strand 5
A
331 336anti-parallel
Strand 6
A
339 346anti-parallel
Strand 7
A
349 357anti-parallel
Strand 8
B
249 256anti-parallel
Strand 9
B
239 246anti-parallel
Strand 10
B
161 168anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il