Analysis of interatomic Contacts of Structural Units in PDB entry:
6PNR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PNR entry

There are 2 chains in PDB entry 6PNR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	VAL 667
C	MET 1	VAL 667

There are 38 helices in PDB entry 6PNR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	146	157	Right-handed alpha
Helix 2	AA2	A	216	229	Right-handed alpha
Helix 3	AA3	A	235	241	Right-handed 310
Helix 4	AA4	A	249	263	Right-handed alpha
Helix 5	AA5	A	273	276	Right-handed 310
Helix 6	AA6	A	300	311	Right-handed alpha
Helix 7	AA7	A	327	336	Right-handed alpha
Helix 8	AA8	A	364	379	Right-handed alpha
Helix 9	AA9	A	380	383	Right-handed 310
Helix 10	AB1	A	407	430	Right-handed alpha
Helix 11	AB2	A	446	451	Right-handed alpha
Helix 12	AB3	A	468	482	Right-handed alpha
Helix 13	AB4	A	503	515	Right-handed alpha
Helix 14	AB5	A	527	531	Right-handed 310
Helix 15	AB6	A	533	536	Right-handed 310
Helix 16	AB7	A	537	569	Right-handed alpha
Helix 17	AB8	A	575	579	Right-handed 310
Helix 18	AB9	A	584	588	Right-handed 310
Helix 19	AC1	A	654	666	Right-handed alpha
Helix 20	AC2	C	146	157	Right-handed alpha
Helix 21	AC3	C	216	229	Right-handed alpha
Helix 22	AC4	C	235	241	Right-handed 310
Helix 23	AC5	C	249	263	Right-handed alpha
Helix 24	AC6	C	273	276	Right-handed 310
Helix 25	AC7	C	300	311	Right-handed alpha
Helix 26	AC8	C	327	337	Right-handed alpha
Helix 27	AC9	C	364	379	Right-handed alpha
Helix 28	AD1	C	380	383	Right-handed 310
Helix 29	AD2	C	407	430	Right-handed alpha
Helix 30	AD3	C	446	451	Right-handed alpha
Helix 31	AD4	C	468	482	Right-handed alpha
Helix 32	AD5	C	503	515	Right-handed alpha
Helix 33	AD6	C	527	531	Right-handed 310
Helix 34	AD7	C	533	536	Right-handed 310
Helix 35	AD8	C	537	569	Right-handed alpha
Helix 36	AD9	C	575	579	Right-handed 310
Helix 37	AE1	C	584	589	Right-handed 310
Helix 38	AE2	C	654	666	Right-handed alpha

There are 18 sheets in PDB entry 6PNR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	5	first strand
Strand 2	A	10	14	anti-parallel
Strand 3	A	17	22	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	56	first strand
Strand 2	A	29	41	anti-parallel
Strand 3	A	101	107	anti-parallel
Strand 4	A	197	202	anti-parallel
Strand 5	A	188	194	anti-parallel
Strand 6	A	130	133	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	64	first strand
Strand 2	A	68	73	anti-parallel
Strand 3	A	77	83	anti-parallel
Strand 4	A	87	94	anti-parallel
Strand 5	A	208	213	anti-parallel
Strand 6	A	178	182	anti-parallel
Strand 7	A	168	174	anti-parallel
Strand 8	A	114	118	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	245	first strand
Strand 2	A	267	271	parallel
Strand 3	A	314	319	parallel
Strand 4	A	386	389	parallel
Strand 5	A	437	439	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	278	280	first strand
Strand 2	A	285	287	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	324	first strand
Strand 2	A	356	359	anti-parallel
Strand 3	A	349	351	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	490	491	first strand
Strand 2	A	521	522	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	573	574	first strand
Strand 2	A	593	595	anti-parallel
Strand 3	A	599	601	anti-parallel
Strand 4	A	646	649	anti-parallel
Strand 5	A	621	623	anti-parallel
Strand 6	A	629	630	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	611	616	first strand
Strand 2	A	633	638	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	10	14	anti-parallel
Strand 3	C	17	22	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	56	first strand
Strand 2	C	29	41	anti-parallel
Strand 3	C	101	107	anti-parallel
Strand 4	C	197	202	anti-parallel
Strand 5	C	188	191	anti-parallel
Strand 6	C	130	133	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	64	first strand
Strand 2	C	69	73	anti-parallel
Strand 3	C	77	83	anti-parallel
Strand 4	C	87	94	anti-parallel
Strand 5	C	208	213	anti-parallel
Strand 6	C	178	182	anti-parallel
Strand 7	C	168	174	anti-parallel
Strand 8	C	114	118	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	245	first strand
Strand 2	C	267	271	parallel
Strand 3	C	314	319	parallel
Strand 4	C	386	389	parallel
Strand 5	C	437	439	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	278	280	first strand
Strand 2	C	285	287	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	324	first strand
Strand 2	C	356	359	anti-parallel
Strand 3	C	349	351	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	490	491	first strand
Strand 2	C	521	522	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	573	574	first strand
Strand 2	C	593	595	anti-parallel
Strand 3	C	599	601	anti-parallel
Strand 4	C	646	649	anti-parallel
Strand 5	C	621	623	anti-parallel
Strand 6	C	629	630	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	611	616	first strand
Strand 2	C	633	638	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PNR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PNR