Analysis of interatomic Contacts of Structural Units in PDB entry:
6PNT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PNT entry

There is 1 chain in PDB entry 6PNT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 11LEU 437
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6PNT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 39Right-handed alpha
Helix 2
AA2
A
48 50Right-handed 310
Helix 3
AA3
A
51 58Right-handed alpha
Helix 4
AA4
A
66 69Right-handed 310
Helix 5
AA5
A
75 79Right-handed 310
Helix 6
AA6
A
81 96Right-handed alpha
Helix 7
AA7
A
97 105Right-handed alpha
Helix 8
AA8
A
111 117Right-handed 310
Helix 9
AA9
A
118 133Right-handed alpha
Helix 10
AB1
A
145 150Right-handed 310
Helix 11
AB2
A
162 167Right-handed 310
Helix 12
AB3
A
181 211Right-handed alpha
Helix 13
AB4
A
229 233Right-handed 310
Helix 14
AB5
A
234 238Right-handed 310
Helix 15
AB6
A
262 266Right-handed 310
Helix 16
AB7
A
277 283Right-handed alpha
Helix 17
AB8
A
284 296Right-handed alpha
Helix 18
AB9
A
309 313Right-handed 310
Helix 19
AC1
A
326 331Right-handed alpha
Helix 20
AC2
A
332 334Right-handed 310
Helix 21
AC3
A
342 352Right-handed alpha
Helix 22
AC4
A
364 375Right-handed alpha
Helix 23
AC5
A
382 386Right-handed 310
Helix 24
AC6
A
387 400Right-handed alpha
Helix 25
AC7
A
401 417Right-handed alpha
Helix 26
AC8
A
419 435Right-handed alpha
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There are 2 sheets in PDB entry 6PNT. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
42 47parallel
Strand 3
A
14 19parallel
Strand 4
A
136 140parallel
Strand 5
A
155 159parallel
Strand 6
A
224 227parallel
Strand 7
A
244 247parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 322first strand
Strand 2
A
301 305parallel
Strand 3
A
272 276parallel
Strand 4
A
336 339parallel
Strand 5
A
356 358parallel
Strand 6
A
378 380parallel
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