Analysis of interatomic Contacts of Structural Units in PDB entry:
6PNV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PNV entry

There is 1 chain in PDB entry 6PNV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 21LEU 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 6PNV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 66Right-handed alpha
Helix 2
AA2
A
73 77Right-handed 310
Helix 3
AA3
A
88 94Right-handed alpha
Helix 4
AA4
A
138 140Right-handed 310
Helix 5
AA5
A
141 159Right-handed alpha
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There are 8 sheets in PDB entry 6PNV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 30first strand
Strand 2
A
412 415anti-parallel
Strand 3
A
400 406anti-parallel
Strand 4
A
389 395anti-parallel
Strand 5
A
378 383anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
99 107parallel
Strand 3
A
36 40parallel
Strand 4
A
69 71parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
99 107parallel
Strand 3
A
113 121anti-parallel
Strand 4
A
129 137anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 199first strand
Strand 2
A
181 187anti-parallel
Strand 3
A
167 173anti-parallel
Strand 4
A
421 427anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 208first strand
Strand 2
A
214 219anti-parallel
Strand 3
A
226 231anti-parallel
Strand 4
A
237 241anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 252first strand
Strand 2
A
258 263anti-parallel
Strand 3
A
270 275anti-parallel
Strand 4
A
281 283anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 296first strand
Strand 2
A
302 307anti-parallel
Strand 3
A
314 319anti-parallel
Strand 4
A
326 327anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 340first strand
Strand 2
A
346 353anti-parallel
Strand 3
A
356 363anti-parallel
Strand 4
A
369 371anti-parallel
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