Analysis of interatomic Contacts of Structural Units in PDB entry:
6POP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6POP entry

There are 6 chains in PDB entry 6POP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	VAL 475
B	SER 1	VAL 475
C	SER 1	VAL 475
D	SER 1	VAL 475
E	SER 1	VAL 475
F	SER 1	VAL 475

There are108 helices in PDB entry 6POP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	37	56	Right-handed alpha
Helix 2	AA2	A	59	77	Right-handed alpha
Helix 3	AA3	A	77	90	Right-handed alpha
Helix 4	AA4	A	95	115	Right-handed alpha
Helix 5	AA5	A	149	164	Right-handed alpha
Helix 6	AA6	A	177	191	Right-handed alpha
Helix 7	AA7	A	206	214	Right-handed alpha
Helix 8	AA8	A	225	236	Right-handed alpha
Helix 9	AA9	A	237	239	Right-handed 310
Helix 10	AB1	A	260	274	Right-handed alpha
Helix 11	AB2	A	275	278	Right-handed 310
Helix 12	AB3	A	292	306	Right-handed alpha
Helix 13	AB4	A	324	341	Right-handed alpha
Helix 14	AB5	A	372	377	Right-handed alpha
Helix 15	AB6	A	391	400	Right-handed alpha
Helix 16	AB7	A	414	425	Right-handed alpha
Helix 17	AB8	A	446	450	Right-handed 310
Helix 18	AB9	A	456	462	Right-handed 310
Helix 19	AC1	B	37	57	Right-handed alpha
Helix 20	AC2	B	59	77	Right-handed alpha
Helix 21	AC3	B	77	90	Right-handed alpha
Helix 22	AC4	B	95	115	Right-handed alpha
Helix 23	AC5	B	149	164	Right-handed alpha
Helix 24	AC6	B	177	190	Right-handed alpha
Helix 25	AC7	B	206	214	Right-handed alpha
Helix 26	AC8	B	225	236	Right-handed alpha
Helix 27	AC9	B	237	239	Right-handed 310
Helix 28	AD1	B	260	274	Right-handed alpha
Helix 29	AD2	B	275	278	Right-handed 310
Helix 30	AD3	B	292	306	Right-handed alpha
Helix 31	AD4	B	324	340	Right-handed alpha
Helix 32	AD5	B	372	377	Right-handed alpha
Helix 33	AD6	B	391	400	Right-handed alpha
Helix 34	AD7	B	414	425	Right-handed alpha
Helix 35	AD8	B	446	450	Right-handed 310
Helix 36	AD9	B	456	462	Right-handed 310
Helix 37	AE1	C	37	57	Right-handed alpha
Helix 38	AE2	C	59	77	Right-handed alpha
Helix 39	AE3	C	77	90	Right-handed alpha
Helix 40	AE4	C	95	115	Right-handed alpha
Helix 41	AE5	C	149	164	Right-handed alpha
Helix 42	AE6	C	177	190	Right-handed alpha
Helix 43	AE7	C	206	214	Right-handed alpha
Helix 44	AE8	C	225	236	Right-handed alpha
Helix 45	AE9	C	237	239	Right-handed 310
Helix 46	AF1	C	260	274	Right-handed alpha
Helix 47	AF2	C	275	278	Right-handed 310
Helix 48	AF3	C	292	306	Right-handed alpha
Helix 49	AF4	C	324	340	Right-handed alpha
Helix 50	AF5	C	372	377	Right-handed alpha
Helix 51	AF6	C	391	400	Right-handed alpha
Helix 52	AF7	C	414	425	Right-handed alpha
Helix 53	AF8	C	446	450	Right-handed 310
Helix 54	AF9	C	456	462	Right-handed 310
Helix 55	AG1	D	37	57	Right-handed alpha
Helix 56	AG2	D	59	77	Right-handed alpha
Helix 57	AG3	D	77	90	Right-handed alpha
Helix 58	AG4	D	95	115	Right-handed alpha
Helix 59	AG5	D	149	164	Right-handed alpha
Helix 60	AG6	D	177	191	Right-handed alpha
Helix 61	AG7	D	206	214	Right-handed alpha
Helix 62	AG8	D	225	236	Right-handed alpha
Helix 63	AG9	D	237	239	Right-handed 310
Helix 64	AH1	D	260	274	Right-handed alpha
Helix 65	AH2	D	275	278	Right-handed 310
Helix 66	AH3	D	292	305	Right-handed alpha
Helix 67	AH4	D	324	341	Right-handed alpha
Helix 68	AH5	D	372	377	Right-handed alpha
Helix 69	AH6	D	391	400	Right-handed alpha
Helix 70	AH7	D	414	425	Right-handed alpha
Helix 71	AH8	D	446	450	Right-handed 310
Helix 72	AH9	D	456	462	Right-handed 310
Helix 73	AI1	E	37	57	Right-handed alpha
Helix 74	AI2	E	59	77	Right-handed alpha
Helix 75	AI3	E	77	90	Right-handed alpha
Helix 76	AI4	E	95	115	Right-handed alpha
Helix 77	AI5	E	149	164	Right-handed alpha
Helix 78	AI6	E	177	191	Right-handed alpha
Helix 79	AI7	E	206	214	Right-handed alpha
Helix 80	AI8	E	225	236	Right-handed alpha
Helix 81	AI9	E	237	239	Right-handed 310
Helix 82	AJ1	E	260	274	Right-handed alpha
Helix 83	AJ2	E	275	278	Right-handed 310
Helix 84	AJ3	E	292	306	Right-handed alpha
Helix 85	AJ4	E	324	341	Right-handed alpha
Helix 86	AJ5	E	372	377	Right-handed alpha
Helix 87	AJ6	E	391	400	Right-handed alpha
Helix 88	AJ7	E	414	425	Right-handed alpha
Helix 89	AJ8	E	446	448	Right-handed 310
Helix 90	AJ9	E	456	462	Right-handed 310
Helix 91	AK1	F	37	57	Right-handed alpha
Helix 92	AK2	F	59	77	Right-handed alpha
Helix 93	AK3	F	77	90	Right-handed alpha
Helix 94	AK4	F	95	115	Right-handed alpha
Helix 95	AK5	F	149	164	Right-handed alpha
Helix 96	AK6	F	177	191	Right-handed alpha
Helix 97	AK7	F	206	214	Right-handed alpha
Helix 98	AK8	F	225	236	Right-handed alpha
Helix 99	AK9	F	237	239	Right-handed 310
Helix 100	AL1	F	260	274	Right-handed alpha
Helix 101	AL2	F	275	278	Right-handed 310
Helix 102	AL3	F	292	306	Right-handed alpha
Helix 103	AL4	F	324	340	Right-handed alpha
Helix 104	AL5	F	372	377	Right-handed alpha
Helix 105	AL6	F	391	401	Right-handed alpha
Helix 106	AL7	F	414	425	Right-handed alpha
Helix 107	AL8	F	446	450	Right-handed 310
Helix 108	AL9	F	456	462	Right-handed 310

There are 30 sheets in PDB entry 6POP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	29	35	parallel
Strand 3	A	17	22	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	11	13	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	122	first strand
Strand 2	A	129	137	anti-parallel
Strand 3	A	464	472	anti-parallel
Strand 4	E	429	432	parallel
Strand 5	E	409	411	parallel
Strand 6	E	251	255	parallel
Strand 7	E	283	289	parallel
Strand 8	E	383	389	parallel
Strand 9	E	363	366	parallel
Strand 10	E	344	347	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	199	first strand
Strand 2	A	168	171	parallel
Strand 3	A	140	144	parallel
Strand 4	A	217	223	parallel
Strand 5	A	242	246	parallel

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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	347	first strand
Strand 2	A	363	366	anti-parallel
Strand 3	A	383	389	parallel
Strand 4	A	283	289	parallel
Strand 5	A	251	255	parallel
Strand 6	A	409	411	parallel
Strand 7	A	429	432	parallel
Strand 8	E	464	472	parallel
Strand 9	E	129	137	anti-parallel
Strand 10	E	120	122	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	443	444	first strand
Strand 2	A	453	454	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	29	35	parallel
Strand 3	B	17	22	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	8	first strand
Strand 2	B	11	13	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	122	first strand
Strand 2	B	129	137	anti-parallel
Strand 3	B	464	472	anti-parallel
Strand 4	F	429	432	parallel
Strand 5	F	407	411	parallel
Strand 6	F	251	255	parallel
Strand 7	F	283	289	parallel
Strand 8	F	383	389	parallel
Strand 9	F	363	366	parallel
Strand 10	F	344	347	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	199	first strand
Strand 2	B	168	171	parallel
Strand 3	B	140	145	parallel
Strand 4	B	217	223	parallel
Strand 5	B	242	246	parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	347	first strand
Strand 2	B	363	366	anti-parallel
Strand 3	B	383	389	parallel
Strand 4	B	283	289	parallel
Strand 5	B	251	255	parallel
Strand 6	B	409	411	parallel
Strand 7	B	429	432	parallel
Strand 8	F	464	472	parallel
Strand 9	F	129	137	anti-parallel
Strand 10	F	120	122	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	444	first strand
Strand 2	B	453	454	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	29	34	parallel
Strand 3	C	18	22	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	8	first strand
Strand 2	C	11	13	anti-parallel

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There are 10 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	122	first strand
Strand 2	C	129	137	anti-parallel
Strand 3	C	464	472	anti-parallel
Strand 4	D	429	432	parallel
Strand 5	D	407	411	parallel
Strand 6	D	251	255	parallel
Strand 7	D	283	289	parallel
Strand 8	D	383	389	parallel
Strand 9	D	363	366	parallel
Strand 10	D	344	347	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	199	first strand
Strand 2	C	168	171	parallel
Strand 3	C	140	144	parallel
Strand 4	C	217	223	parallel
Strand 5	C	242	246	parallel

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There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	347	first strand
Strand 2	C	363	366	anti-parallel
Strand 3	C	383	389	parallel
Strand 4	C	283	289	parallel
Strand 5	C	251	255	parallel
Strand 6	C	409	411	parallel
Strand 7	C	429	432	parallel
Strand 8	D	464	472	parallel
Strand 9	D	129	137	anti-parallel
Strand 10	D	120	122	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	443	444	first strand
Strand 2	C	453	454	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	4	first strand
Strand 2	D	29	34	parallel
Strand 3	D	18	22	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	11	13	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	199	first strand
Strand 2	D	168	171	parallel
Strand 3	D	140	144	parallel
Strand 4	D	217	223	parallel
Strand 5	D	242	246	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	443	444	first strand
Strand 2	D	453	454	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	4	first strand
Strand 2	E	29	35	parallel
Strand 3	E	17	22	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	8	first strand
Strand 2	E	11	13	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	197	199	first strand
Strand 2	E	168	171	parallel
Strand 3	E	140	144	parallel
Strand 4	E	217	223	parallel
Strand 5	E	242	246	parallel
Strand 6	E	450	451	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	443	444	first strand
Strand 2	E	453	454	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	4	first strand
Strand 2	F	29	34	parallel
Strand 3	F	18	22	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	8	first strand
Strand 2	F	11	13	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	197	199	first strand
Strand 2	F	168	171	parallel
Strand 3	F	140	144	parallel
Strand 4	F	217	223	parallel
Strand 5	F	242	246	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	443	444	first strand
Strand 2	F	453	454	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6POP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6POP