Analysis of interatomic Contacts of Structural Units in PDB entry:
6PP4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PP4 entry

There are 4 chains in PDB entry 6PP4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 68	TRP 480
B	LYS 67	TRP 480
C	PHE 68	TRP 480
D	LYS 67	PRO 120

There are 72 helices in PDB entry 6PP4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	83	88	Right-handed 310
Helix 2	AA2	A	120	137	Right-handed alpha
Helix 3	AA3	A	143	161	Right-handed alpha
Helix 4	AA4	A	166	180	Right-handed alpha
Helix 5	AA5	A	186	190	Right-handed 310
Helix 6	AA6	A	203	220	Right-handed alpha
Helix 7	AA7	A	221	223	Right-handed 310
Helix 8	AA8	A	267	276	Right-handed alpha
Helix 9	AA9	A	306	310	Right-handed 310
Helix 10	AB1	A	323	327	Right-handed 310
Helix 11	AB2	A	359	364	Right-handed alpha
Helix 12	AB3	A	364	369	Right-handed alpha
Helix 13	AB4	A	375	384	Right-handed alpha
Helix 14	AB5	A	389	392	Right-handed 310
Helix 15	AB6	A	393	413	Right-handed alpha
Helix 16	AB7	A	419	439	Right-handed alpha
Helix 17	AB8	A	444	449	Right-handed alpha
Helix 18	AB9	A	453	462	Right-handed 310
Helix 19	AC1	B	83	88	Right-handed 310
Helix 20	AC2	B	120	138	Right-handed alpha
Helix 21	AC3	B	143	161	Right-handed alpha
Helix 22	AC4	B	166	180	Right-handed alpha
Helix 23	AC5	B	186	190	Right-handed 310
Helix 24	AC6	B	203	220	Right-handed alpha
Helix 25	AC7	B	221	223	Right-handed 310
Helix 26	AC8	B	267	277	Right-handed alpha
Helix 27	AC9	B	306	310	Right-handed 310
Helix 28	AD1	B	320	327	Right-handed 310
Helix 29	AD2	B	358	364	Right-handed alpha
Helix 30	AD3	B	364	369	Right-handed alpha
Helix 31	AD4	B	375	383	Right-handed alpha
Helix 32	AD5	B	389	392	Right-handed 310
Helix 33	AD6	B	393	413	Right-handed alpha
Helix 34	AD7	B	419	439	Right-handed alpha
Helix 35	AD8	B	444	449	Right-handed alpha
Helix 36	AD9	B	453	457	Right-handed 310
Helix 37	AE1	C	83	88	Right-handed 310
Helix 38	AE2	C	120	138	Right-handed alpha
Helix 39	AE3	C	144	161	Right-handed alpha
Helix 40	AE4	C	166	180	Right-handed alpha
Helix 41	AE5	C	186	190	Right-handed 310
Helix 42	AE6	C	203	220	Right-handed alpha
Helix 43	AE7	C	221	223	Right-handed 310
Helix 44	AE8	C	267	277	Right-handed alpha
Helix 45	AE9	C	306	310	Right-handed 310
Helix 46	AF1	C	322	327	Right-handed 310
Helix 47	AF2	C	359	364	Right-handed alpha
Helix 48	AF3	C	364	369	Right-handed alpha
Helix 49	AF4	C	375	383	Right-handed alpha
Helix 50	AF5	C	389	392	Right-handed 310
Helix 51	AF6	C	393	414	Right-handed alpha
Helix 52	AF7	C	419	439	Right-handed alpha
Helix 53	AF8	C	444	449	Right-handed alpha
Helix 54	AF9	C	453	457	Right-handed 310
Helix 55	AG1	D	83	88	Right-handed 310
Helix 56	AG2	D	120	138	Right-handed alpha
Helix 57	AG3	D	143	161	Right-handed alpha
Helix 58	AG4	D	166	180	Right-handed alpha
Helix 59	AG5	D	186	190	Right-handed 310
Helix 60	AG6	D	203	220	Right-handed alpha
Helix 61	AG7	D	221	223	Right-handed 310
Helix 62	AG8	D	267	277	Right-handed alpha
Helix 63	AG9	D	306	310	Right-handed 310
Helix 64	AH1	D	320	327	Right-handed 310
Helix 65	AH2	D	358	364	Right-handed alpha
Helix 66	AH3	D	364	369	Right-handed alpha
Helix 67	AH4	D	375	383	Right-handed alpha
Helix 68	AH5	D	389	392	Right-handed 310
Helix 69	AH6	D	393	414	Right-handed alpha
Helix 70	AH7	D	419	439	Right-handed alpha
Helix 71	AH8	D	444	449	Right-handed alpha
Helix 72	AH9	D	453	457	Right-handed 310

There are 26 sheets in PDB entry 6PP4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	72	first strand
Strand 2	A	79	81	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	197	first strand
Strand 2	A	227	230	parallel
Strand 3	A	353	354	anti-parallel
Strand 4	A	335	336	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	243	first strand
Strand 2	A	291	294	anti-parallel
Strand 3	A	301	303	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	253	255	first strand
Strand 2	A	261	263	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	314	first strand
Strand 2	A	329	331	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	346	348	first strand
Strand 2	A	340	343	anti-parallel
Strand 3	A	472	474	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	358	first strand
Strand 2	A	417	418	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	72	first strand
Strand 2	B	79	81	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	197	first strand
Strand 2	B	227	230	parallel
Strand 3	B	353	354	anti-parallel
Strand 4	B	335	336	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	243	first strand
Strand 2	B	291	294	anti-parallel
Strand 3	B	301	303	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	255	first strand
Strand 2	B	261	263	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	312	314	first strand
Strand 2	B	329	331	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	346	348	first strand
Strand 2	B	340	343	anti-parallel
Strand 3	B	472	474	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	72	first strand
Strand 2	C	79	81	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	194	197	first strand
Strand 2	C	227	230	parallel
Strand 3	C	353	354	anti-parallel
Strand 4	C	335	336	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	243	first strand
Strand 2	C	291	294	anti-parallel
Strand 3	C	300	303	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	253	255	first strand
Strand 2	C	261	263	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	314	first strand
Strand 2	C	329	331	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	346	348	first strand
Strand 2	C	340	343	anti-parallel
Strand 3	C	472	474	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	358	first strand
Strand 2	C	417	418	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	72	first strand
Strand 2	D	79	81	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	197	first strand
Strand 2	D	227	230	parallel
Strand 3	D	353	354	anti-parallel
Strand 4	D	335	336	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	242	243	first strand
Strand 2	D	291	294	anti-parallel
Strand 3	D	301	303	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	253	255	first strand
Strand 2	D	261	263	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	312	314	first strand
Strand 2	D	329	331	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	346	348	first strand
Strand 2	D	340	343	anti-parallel
Strand 3	D	472	474	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PP4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PP4