Analysis of interatomic Contacts of Structural Units in PDB entry:
6PP7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PP7 entry

There are 7 chains in PDB entry 6PP7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 64	TYR 413
B	ALA 63	GLY 414
C	LEU 64	GLY 414
D	ALA 63	GLY 414
E	LEU 64	GLY 414
F	LEU 64	TYR 413
S	UNK 1	UNK 19

There are109 helices in PDB entry 6PP7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	76	Right-handed alpha
Helix 2	AA2	A	81	101	Right-handed alpha
Helix 3	AA3	A	124	136	Right-handed alpha
Helix 4	AA4	A	146	148	Right-handed 310
Helix 5	AA5	A	158	170	Right-handed alpha
Helix 6	AA6	A	172	178	Right-handed alpha
Helix 7	AA7	A	185	190	Right-handed 310
Helix 8	AA8	A	207	216	Right-handed alpha
Helix 9	AA9	A	223	227	Right-handed 310
Helix 10	AB1	A	253	264	Right-handed alpha
Helix 11	AB2	A	291	299	Right-handed alpha
Helix 12	AB3	A	301	307	Right-handed alpha
Helix 13	AB4	A	318	326	Right-handed alpha
Helix 14	AB5	A	332	343	Right-handed alpha
Helix 15	AB6	A	351	366	Right-handed alpha
Helix 16	AB7	A	367	371	Right-handed 310
Helix 17	AB8	A	372	386	Right-handed alpha
Helix 18	AB9	A	399	405	Right-handed alpha
Helix 19	AC1	B	66	78	Right-handed alpha
Helix 20	AC2	B	81	101	Right-handed alpha
Helix 21	AC3	B	124	136	Right-handed alpha
Helix 22	AC4	B	149	153	Right-handed 310
Helix 23	AC5	B	158	170	Right-handed alpha
Helix 24	AC6	B	172	177	Right-handed alpha
Helix 25	AC7	B	185	190	Right-handed 310
Helix 26	AC8	B	204	217	Right-handed alpha
Helix 27	AC9	B	223	227	Right-handed 310
Helix 28	AD1	B	253	264	Right-handed alpha
Helix 29	AD2	B	282	288	Right-handed alpha
Helix 30	AD3	B	291	299	Right-handed alpha
Helix 31	AD4	B	301	307	Right-handed alpha
Helix 32	AD5	B	318	328	Right-handed alpha
Helix 33	AD6	B	332	343	Right-handed alpha
Helix 34	AD7	B	351	366	Right-handed alpha
Helix 35	AD8	B	367	371	Right-handed 310
Helix 36	AD9	B	372	387	Right-handed alpha
Helix 37	AE1	B	399	405	Right-handed alpha
Helix 38	AE2	C	66	78	Right-handed alpha
Helix 39	AE3	C	81	101	Right-handed alpha
Helix 40	AE4	C	124	136	Right-handed alpha
Helix 41	AE5	C	158	170	Right-handed alpha
Helix 42	AE6	C	172	177	Right-handed alpha
Helix 43	AE7	C	186	190	Right-handed 310
Helix 44	AE8	C	204	217	Right-handed alpha
Helix 45	AE9	C	223	227	Right-handed 310
Helix 46	AF1	C	253	263	Right-handed alpha
Helix 47	AF2	C	282	289	Right-handed alpha
Helix 48	AF3	C	291	299	Right-handed alpha
Helix 49	AF4	C	301	307	Right-handed alpha
Helix 50	AF5	C	318	328	Right-handed alpha
Helix 51	AF6	C	332	343	Right-handed alpha
Helix 52	AF7	C	351	365	Right-handed alpha
Helix 53	AF8	C	366	371	Right-handed 310
Helix 54	AF9	C	372	387	Right-handed alpha
Helix 55	AG1	C	399	405	Right-handed alpha
Helix 56	AG2	D	66	78	Right-handed alpha
Helix 57	AG3	D	81	101	Right-handed alpha
Helix 58	AG4	D	124	136	Right-handed alpha
Helix 59	AG5	D	159	170	Right-handed alpha
Helix 60	AG6	D	172	177	Right-handed alpha
Helix 61	AG7	D	185	190	Right-handed 310
Helix 62	AG8	D	204	217	Right-handed alpha
Helix 63	AG9	D	253	264	Right-handed alpha
Helix 64	AH1	D	282	288	Right-handed alpha
Helix 65	AH2	D	291	299	Right-handed alpha
Helix 66	AH3	D	301	307	Right-handed alpha
Helix 67	AH4	D	318	328	Right-handed alpha
Helix 68	AH5	D	332	343	Right-handed alpha
Helix 69	AH6	D	351	365	Right-handed alpha
Helix 70	AH7	D	368	371	Right-handed 310
Helix 71	AH8	D	372	387	Right-handed alpha
Helix 72	AH9	D	399	405	Right-handed alpha
Helix 73	AI1	E	66	78	Right-handed alpha
Helix 74	AI2	E	81	101	Right-handed alpha
Helix 75	AI3	E	124	136	Right-handed alpha
Helix 76	AI4	E	159	170	Right-handed alpha
Helix 77	AI5	E	172	177	Right-handed alpha
Helix 78	AI6	E	186	190	Right-handed 310
Helix 79	AI7	E	204	217	Right-handed alpha
Helix 80	AI8	E	223	227	Right-handed 310
Helix 81	AI9	E	253	263	Right-handed alpha
Helix 82	AJ1	E	282	288	Right-handed alpha
Helix 83	AJ2	E	291	299	Right-handed alpha
Helix 84	AJ3	E	301	307	Right-handed alpha
Helix 85	AJ4	E	318	328	Right-handed alpha
Helix 86	AJ5	E	332	343	Right-handed alpha
Helix 87	AJ6	E	351	365	Right-handed alpha
Helix 88	AJ7	E	366	371	Right-handed 310
Helix 89	AJ8	E	372	387	Right-handed alpha
Helix 90	AJ9	E	399	405	Right-handed alpha
Helix 91	AK1	F	66	78	Right-handed alpha
Helix 92	AK2	F	82	101	Right-handed alpha
Helix 93	AK3	F	124	136	Right-handed alpha
Helix 94	AK4	F	159	169	Right-handed alpha
Helix 95	AK5	F	172	179	Right-handed alpha
Helix 96	AK6	F	185	190	Right-handed 310
Helix 97	AK7	F	204	217	Right-handed alpha
Helix 98	AK8	F	223	227	Right-handed 310
Helix 99	AK9	F	253	263	Right-handed alpha
Helix 100	AL1	F	283	288	Right-handed alpha
Helix 101	AL2	F	291	299	Right-handed alpha
Helix 102	AL3	F	301	307	Right-handed alpha
Helix 103	AL4	F	318	328	Right-handed alpha
Helix 104	AL5	F	332	343	Right-handed alpha
Helix 105	AL6	F	351	365	Right-handed alpha
Helix 106	AL7	F	367	370	Right-handed 310
Helix 107	AL8	F	371	387	Right-handed alpha
Helix 108	AL9	F	399	405	Right-handed alpha
Helix 109	AM1	S	14	19	Right-handed alpha

There are 21 sheets in PDB entry 6PP7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	117	first strand
Strand 2	A	310	312	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	144	first strand
Strand 2	A	181	184	parallel
Strand 3	A	245	247	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	222	first strand
Strand 2	A	236	238	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	350	first strand
Strand 2	A	395	398	parallel
Strand 3	A	410	412	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	118	first strand
Strand 2	B	310	313	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	144	first strand
Strand 2	B	180	184	parallel
Strand 3	B	244	247	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	222	first strand
Strand 2	B	236	238	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	350	first strand
Strand 2	B	393	398	parallel
Strand 3	B	410	413	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	115	117	first strand
Strand 2	C	244	248	parallel
Strand 3	C	180	184	parallel
Strand 4	C	140	144	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	222	first strand
Strand 2	C	236	239	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	350	first strand
Strand 2	C	393	398	parallel
Strand 3	C	410	413	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	118	first strand
Strand 2	D	312	313	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	144	first strand
Strand 2	D	180	184	parallel
Strand 3	D	244	247	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	220	222	first strand
Strand 2	D	236	238	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	350	first strand
Strand 2	D	393	398	parallel
Strand 3	D	410	413	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	144	first strand
Strand 2	E	180	184	parallel
Strand 3	E	244	248	parallel
Strand 4	E	115	118	parallel
Strand 5	E	312	313	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	220	222	first strand
Strand 2	E	236	238	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	347	350	first strand
Strand 2	E	393	398	parallel
Strand 3	E	410	413	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	140	144	first strand
Strand 2	F	180	184	parallel
Strand 3	F	244	248	parallel
Strand 4	F	115	117	parallel
Strand 5	F	310	311	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	220	222	first strand
Strand 2	F	236	238	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	347	350	first strand
Strand 2	F	395	398	parallel
Strand 3	F	410	412	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PP7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PP7