Analysis of interatomic Contacts of Structural Units in PDB entry:
6PP9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PP9 entry

There are 2 chains in PDB entry 6PP9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 447PRO 722
B
 GLU 38GLN 383
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6PP9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
491 506Right-handed alpha
Helix 2
AA2
A
536 543Right-handed alpha
Helix 3
AA3
A
549 570Right-handed alpha
Helix 4
AA4
A
578 580Right-handed 310
Helix 5
AA5
A
586 588Right-handed 310
Helix 6
AA6
A
597 601Right-handed 310
Helix 7
AA7
A
621 627Right-handed alpha
Helix 8
AA8
A
634 652Right-handed alpha
Helix 9
AA9
A
661 671Right-handed alpha
Helix 10
AB1
A
677 681Right-handed 310
Helix 11
AB2
A
686 697Right-handed alpha
Helix 12
AB3
A
700 704Right-handed 310
Helix 13
AB4
A
706 720Right-handed alpha
Helix 14
AB5
B
43 59Right-handed alpha
Helix 15
AB6
B
64 66Right-handed 310
Helix 16
AB7
B
104 116Right-handed alpha
Helix 17
AB8
B
117 121Right-handed 310
Helix 18
AB9
B
150 159Right-handed alpha
Helix 19
AC1
B
162 185Right-handed alpha
Helix 20
AC2
B
192 194Right-handed 310
Helix 21
AC3
B
212 223Right-handed alpha
Helix 22
AC4
B
231 236Right-handed alpha
Helix 23
AC5
B
242 259Right-handed alpha
Helix 24
AC6
B
268 273Right-handed alpha
Helix 25
AC7
B
309 320Right-handed alpha
Helix 26
AC8
B
331 342Right-handed alpha
Helix 27
AC9
B
351 357Right-handed alpha
Helix 28
AD1
B
358 367Right-handed alpha
Helix 29
AD2
B
370 380Right-handed alpha
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There are 5 sheets in PDB entry 6PP9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 465first strand
Strand 2
A
469 475anti-parallel
Strand 3
A
479 485anti-parallel
Strand 4
A
526 530anti-parallel
Strand 5
A
516 520anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 585first strand
Strand 2
A
589 592anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
604 605first strand
Strand 2
A
608 609anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 76first strand
Strand 2
B
81 87anti-parallel
Strand 3
B
93 99anti-parallel
Strand 4
B
138 144anti-parallel
Strand 5
B
129 135anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 198first strand
Strand 2
B
204 206anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il