Analysis of interatomic Contacts of Structural Units in PDB entry:
6PPJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PPJ entry

There are 2 chains in PDB entry 6PPJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 28UNK 1081
A
 SER 14GLN 1039
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 88 helices in PDB entry 6PPJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
31 36Right-handed alpha
Helix 2
AA2
B
51 56Right-handed alpha
Helix 3
AA3
B
56 67Right-handed alpha
Helix 4
AA4
B
80 93Right-handed alpha
Helix 5
AA5
B
93 98Right-handed alpha
Helix 6
AA6
B
119 130Right-handed alpha
Helix 7
AA7
B
131 134Right-handed 310
Helix 8
AA8
B
148 153Right-handed alpha
Helix 9
AA9
B
172 180Right-handed alpha
Helix 10
AB1
B
182 187Right-handed alpha
Helix 11
AB2
B
191 205Right-handed alpha
Helix 12
AB3
B
226 231Right-handed alpha
Helix 13
AB4
B
232 234Right-handed 310
Helix 14
AB5
B
235 240Right-handed alpha
Helix 15
AB6
B
242 248Right-handed alpha
Helix 16
AB7
B
255 268Right-handed alpha
Helix 17
AB8
B
268 279Right-handed alpha
Helix 18
AB9
B
286 290Right-handed 310
Helix 19
AC1
B
291 295Right-handed 310
Helix 20
AC2
B
317 321Right-handed 310
Helix 21
AC3
B
335 340Right-handed alpha
Helix 22
AC4
B
362 376Right-handed alpha
Helix 23
AC5
B
403 419Right-handed alpha
Helix 24
AC6
B
437 440Right-handed 310
Helix 25
AC7
B
441 450Right-handed alpha
Helix 26
AC8
B
469 481Right-handed alpha
Helix 27
AC9
B
484 493Right-handed alpha
Helix 28
AD1
B
500 514Right-handed alpha
Helix 29
AD2
B
524 528Right-handed alpha
Helix 30
AD3
B
558 572Right-handed alpha
Helix 31
AD4
B
573 577Right-handed 310
Helix 32
AD5
B
578 590Right-handed alpha
Helix 33
AD6
B
591 598Right-handed alpha
Helix 34
AD7
B
609 620Right-handed alpha
Helix 35
AD8
B
636 642Right-handed alpha
Helix 36
AD9
B
702 706Right-handed 310
Helix 37
AE1
B
735 742Right-handed alpha
Helix 38
AE2
B
744 749Right-handed alpha
Helix 39
AE3
B
752 759Right-handed alpha
Helix 40
AE4
B
787 794Right-handed alpha
Helix 41
AE5
B
839 853Right-handed alpha
Helix 42
AE6
B
864 876Right-handed alpha
Helix 43
AE7
B
893 898Right-handed alpha
Helix 44
AE8
B
903 911Right-handed alpha
Helix 45
AE9
B
921 935Right-handed alpha
Helix 46
AF1
B
959 972Right-handed alpha
Helix 47
AF2
B
1029 1043Right-handed alpha
Helix 48
AF3
B
1074 1080Right-handed alpha
Helix 49
AF4
A
35 48Right-handed alpha
Helix 50
AF5
A
64 77Right-handed alpha
Helix 51
AF6
A
93 106Right-handed alpha
Helix 52
AF7
A
118 124Right-handed alpha
Helix 53
AF8
A
125 135Right-handed alpha
Helix 54
AF9
A
154 167Right-handed alpha
Helix 55
AG1
A
168 172Right-handed 310
Helix 56
AG2
A
174 185Right-handed alpha
Helix 57
AG3
A
187 201Right-handed alpha
Helix 58
AG4
A
225 239Right-handed alpha
Helix 59
AG5
A
242 247Right-handed alpha
Helix 60
AG6
A
256 260Right-handed 310
Helix 61
AG7
A
266 272Right-handed alpha
Helix 62
AG8
A
319 327Right-handed alpha
Helix 63
AG9
A
328 330Right-handed 310
Helix 64
AH1
A
357 374Right-handed alpha
Helix 65
AH2
A
396 402Right-handed alpha
Helix 66
AH3
A
415 418Right-handed 310
Helix 67
AH4
A
419 435Right-handed alpha
Helix 68
AH5
A
454 466Right-handed alpha
Helix 69
AH6
A
476 486Right-handed alpha
Helix 70
AH7
A
497 510Right-handed alpha
Helix 71
AH8
A
522 531Right-handed alpha
Helix 72
AH9
A
533 540Right-handed alpha
Helix 73
AI1
A
549 559Right-handed alpha
Helix 74
AI2
A
560 570Right-handed alpha
Helix 75
AI3
A
578 587Right-handed alpha
Helix 76
AI4
A
640 645Right-handed alpha
Helix 77
AI5
A
669 677Right-handed alpha
Helix 78
AI6
A
703 708Right-handed alpha
Helix 79
AI7
A
727 736Right-handed alpha
Helix 80
AI8
A
749 763Right-handed alpha
Helix 81
AI9
A
800 807Right-handed alpha
Helix 82
AJ1
A
807 816Right-handed alpha
Helix 83
AJ2
A
827 837Right-handed alpha
Helix 84
AJ3
A
846 854Right-handed alpha
Helix 85
AJ4
A
861 887Right-handed alpha
Helix 86
AJ5
A
952 961Right-handed alpha
Helix 87
AJ6
A
1000 1011Right-handed alpha
Helix 88
AJ7
A
1012 1015Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 6PPJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 118first strand
Strand 2
B
74 78parallel
Strand 3
B
281 284parallel
Strand 4
B
311 314parallel
Strand 5
B
42 46parallel
Strand 6
B
350 353parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
251 252parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 399first strand
Strand 2
B
764 769parallel
Strand 3
B
674 677parallel
Strand 4
B
431 435parallel
Strand 5
B
659 663parallel
Strand 6
B
455 457parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
827 829first strand
Strand 2
A
1020 1022anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
984 989first strand
Strand 2
B
994 999anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 279first strand
Strand 2
A
23 29parallel
Strand 3
A
306 309parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 92first strand
Strand 2
A
58 59parallel
Strand 3
A
253 254parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 354first strand
Strand 2
A
683 689parallel
Strand 3
A
618 622parallel
Strand 4
A
382 386parallel
Strand 5
A
604 607parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
895 897first strand
Strand 2
A
919 923anti-parallel
Strand 3
A
931 933anti-parallel
Strand 4
A
974 975parallel
Strand 5
A
991 992anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il