Analysis of interatomic Contacts of Structural Units in PDB entry:
6PPL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PPL entry

There are 3 chains in PDB entry 6PPL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 155
B
 ASN 113PRO 841
C
 MET 1ARG 160
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 6PPL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 27Right-handed alpha
Helix 2
AA2
A
32 39Right-handed alpha
Helix 3
AA3
A
40 42Right-handed 310
Helix 4
AA4
A
81 84Right-handed 310
Helix 5
AA5
A
87 104Right-handed alpha
Helix 6
AA6
A
117 125Right-handed alpha
Helix 7
AA7
A
126 128Right-handed 310
Helix 8
AA8
B
117 128Right-handed alpha
Helix 9
AA9
B
129 142Right-handed alpha
Helix 10
AB1
B
147 160Right-handed alpha
Helix 11
AB2
B
163 176Right-handed alpha
Helix 12
AB3
B
185 203Right-handed alpha
Helix 13
AB4
B
205 217Right-handed alpha
Helix 14
AB5
B
222 237Right-handed alpha
Helix 15
AB6
B
239 254Right-handed alpha
Helix 16
AB7
B
258 269Right-handed alpha
Helix 17
AB8
B
272 287Right-handed alpha
Helix 18
AB9
B
291 296Right-handed alpha
Helix 19
AC1
B
297 300Right-handed 310
Helix 20
AC2
B
303 321Right-handed alpha
Helix 21
AC3
B
324 329Right-handed alpha
Helix 22
AC4
B
330 334Right-handed 310
Helix 23
AC5
B
335 354Right-handed alpha
Helix 24
AC6
B
369 388Right-handed alpha
Helix 25
AC7
B
389 402Right-handed alpha
Helix 26
AC8
B
408 422Right-handed alpha
Helix 27
AC9
B
423 438Right-handed alpha
Helix 28
AD1
B
442 455Right-handed alpha
Helix 29
AD2
B
457 466Right-handed alpha
Helix 30
AD3
B
467 469Right-handed 310
Helix 31
AD4
B
474 482Right-handed alpha
Helix 32
AD5
B
486 498Right-handed alpha
Helix 33
AD6
B
500 520Right-handed alpha
Helix 34
AD7
B
521 525Right-handed 310
Helix 35
AD8
B
527 532Right-handed alpha
Helix 36
AD9
B
534 545Right-handed alpha
Helix 37
AE1
B
546 550Right-handed 310
Helix 38
AE2
B
551 571Right-handed alpha
Helix 39
AE3
B
643 649Right-handed alpha
Helix 40
AE4
B
652 658Right-handed alpha
Helix 41
AE5
B
661 668Right-handed alpha
Helix 42
AE6
B
671 684Right-handed alpha
Helix 43
AE7
B
687 700Right-handed alpha
Helix 44
AE8
B
705 721Right-handed alpha
Helix 45
AE9
B
727 742Right-handed alpha
Helix 46
AF1
B
746 758Right-handed alpha
Helix 47
AF2
B
761 775Right-handed alpha
Helix 48
AF3
B
779 788Right-handed alpha
Helix 49
AF4
B
798 807Right-handed alpha
Helix 50
AF5
B
819 832Right-handed alpha
Helix 51
AF6
C
7 9Right-handed 310
Helix 52
AF7
C
10 21Right-handed alpha
Helix 53
AF8
C
27 35Right-handed alpha
Helix 54
AF9
C
38 41Right-handed 310
Helix 55
AG1
C
79 82Right-handed 310
Helix 56
AG2
C
87 103Right-handed alpha
Helix 57
AG3
C
115 123Right-handed alpha
Helix 58
AG4
C
152 160Right-handed alpha
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There are 2 sheets in PDB entry 6PPL. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
47 51anti-parallel
Strand 3
A
54 66anti-parallel
Strand 4
A
69 79anti-parallel
Strand 5
A
108 114parallel
Strand 6
A
147 153anti-parallel
Strand 7
A
130 135anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 5first strand
Strand 2
C
43 46anti-parallel
Strand 3
C
52 61anti-parallel
Strand 4
C
69 77anti-parallel
Strand 5
C
106 112parallel
Strand 6
C
144 150anti-parallel
Strand 7
C
129 134anti-parallel
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