Analysis of interatomic Contacts of Structural Units in PDB entry:
6PPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PPR entry

There are 3 chains in PDB entry 6PPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 22PRO 878
A
 GLY 23GLN 1039
X
 T 0 T 59
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 72 helices in PDB entry 6PPR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
56 61Right-handed alpha
Helix 2
AA2
B
61 66Right-handed alpha
Helix 3
AA3
B
81 97Right-handed alpha
Helix 4
AA4
B
119 130Right-handed alpha
Helix 5
AA5
B
144 153Right-handed alpha
Helix 6
AA6
B
172 184Right-handed alpha
Helix 7
AA7
B
200 206Right-handed alpha
Helix 8
AA8
B
221 233Right-handed alpha
Helix 9
AA9
B
235 244Right-handed alpha
Helix 10
AB1
B
253 268Right-handed alpha
Helix 11
AB2
B
286 290Right-handed 310
Helix 12
AB3
B
333 337Right-handed 310
Helix 13
AB4
B
363 371Right-handed alpha
Helix 14
AB5
B
402 417Right-handed alpha
Helix 15
AB6
B
437 442Right-handed alpha
Helix 16
AB7
B
469 474Right-handed alpha
Helix 17
AB8
B
476 481Right-handed alpha
Helix 18
AB9
B
488 493Right-handed alpha
Helix 19
AC1
B
500 505Right-handed alpha
Helix 20
AC2
B
507 514Right-handed alpha
Helix 21
AC3
B
524 528Right-handed alpha
Helix 22
AC4
B
554 572Right-handed alpha
Helix 23
AC5
B
579 590Right-handed alpha
Helix 24
AC6
B
601 605Right-handed 310
Helix 25
AC7
B
609 623Right-handed alpha
Helix 26
AC8
B
634 644Right-handed alpha
Helix 27
AC9
B
727 759Right-handed alpha
Helix 28
AD1
B
785 795Right-handed alpha
Helix 29
AD2
B
840 851Right-handed alpha
Helix 30
AD3
B
864 876Right-handed alpha
Helix 31
AD4
A
37 46Right-handed alpha
Helix 32
AD5
A
64 70Right-handed alpha
Helix 33
AD6
A
72 77Right-handed alpha
Helix 34
AD7
A
97 102Right-handed alpha
Helix 35
AD8
A
120 133Right-handed alpha
Helix 36
AD9
A
150 154Right-handed 310
Helix 37
AE1
A
161 167Right-handed alpha
Helix 38
AE2
A
174 180Right-handed alpha
Helix 39
AE3
A
188 202Right-handed alpha
Helix 40
AE4
A
227 235Right-handed alpha
Helix 41
AE5
A
242 249Right-handed alpha
Helix 42
AE6
A
264 269Right-handed alpha
Helix 43
AE7
A
270 272Right-handed 310
Helix 44
AE8
A
316 327Right-handed alpha
Helix 45
AE9
A
356 374Right-handed alpha
Helix 46
AF1
A
397 402Right-handed alpha
Helix 47
AF2
A
422 433Right-handed alpha
Helix 48
AF3
A
439 447Right-handed alpha
Helix 49
AF4
A
457 466Right-handed alpha
Helix 50
AF5
A
477 486Right-handed alpha
Helix 51
AF6
A
497 505Right-handed alpha
Helix 52
AF7
A
505 510Right-handed alpha
Helix 53
AF8
A
520 531Right-handed alpha
Helix 54
AF9
A
536 540Right-handed 310
Helix 55
AG1
A
546 567Right-handed alpha
Helix 56
AG2
A
578 584Right-handed alpha
Helix 57
AG3
A
640 648Right-handed alpha
Helix 58
AG4
A
666 678Right-handed alpha
Helix 59
AG5
A
704 709Right-handed alpha
Helix 60
AG6
A
727 739Right-handed alpha
Helix 61
AG7
A
750 763Right-handed alpha
Helix 62
AG8
A
797 801Right-handed 310
Helix 63
AG9
A
807 815Right-handed alpha
Helix 64
AH1
A
823 830Right-handed alpha
Helix 65
AH2
A
830 837Right-handed alpha
Helix 66
AH3
A
842 852Right-handed alpha
Helix 67
AH4
A
853 857Right-handed 310
Helix 68
AH5
A
863 884Right-handed alpha
Helix 69
AH6
A
952 961Right-handed alpha
Helix 70
AH7
A
998 1012Right-handed alpha
Helix 71
AH8
A
1013 1015Right-handed 310
Helix 72
AH9
A
1026 1030Right-handed 310
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There are 8 sheets in PDB entry 6PPR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 118first strand
Strand 2
B
74 78parallel
Strand 3
B
281 284parallel
Strand 4
B
311 315parallel
Strand 5
B
41 44parallel
Strand 6
B
350 351parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
251 252parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
396 397first strand
Strand 2
B
765 767parallel
Strand 3
B
675 677parallel
Strand 4
B
432 433parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
455 456first strand
Strand 2
B
659 660parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 353first strand
Strand 2
A
683 688parallel
Strand 3
A
618 622parallel
Strand 4
A
382 386parallel
Strand 5
A
604 607parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
794 796first strand
Strand 2
A
913 923parallel
Strand 3
A
892 901anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
794 796first strand
Strand 2
A
913 923parallel
Strand 3
A
932 933anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
974 978first strand
Strand 2
A
988 992anti-parallel
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