Analysis of interatomic Contacts of Structural Units in PDB entry:
6PQ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PQ9 entry

There is 1 chain in PDB entry 6PQ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 24LYS 291
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6PQ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 39Right-handed alpha
Helix 2
AA2
A
71 88Right-handed alpha
Helix 3
AA3
A
98 102Right-handed 310
Helix 4
AA4
A
106 112Right-handed alpha
Helix 5
AA5
A
119 129Right-handed alpha
Helix 6
AA6
A
131 143Right-handed alpha
Helix 7
AA7
A
144 155Right-handed alpha
Helix 8
AA8
A
165 170Right-handed alpha
Helix 9
AA9
A
172 178Right-handed 310
Helix 10
AB1
A
182 195Right-handed alpha
Helix 11
AB2
A
200 213Right-handed alpha
Helix 12
AB3
A
270 291Right-handed alpha
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There are 3 sheets in PDB entry 6PQ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
43 50anti-parallel
Strand 3
A
257 267anti-parallel
Strand 4
A
241 251anti-parallel
Strand 5
A
231 237anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 67first strand
Strand 2
A
180 181anti-parallel
Strand 3
A
160 161anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
115 118anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il