Analysis of interatomic Contacts of Structural Units in PDB entry:
6PQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PQB entry

There are 4 chains in PDB entry 6PQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3LEU 281
B
 THR 3ARG 280
C
 THR 3LEU 281
D
 THR 3ARG 280
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 6PQB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 18Right-handed alpha
Helix 2
AA2
A
19 22Right-handed 310
Helix 3
AA3
A
25 40Right-handed alpha
Helix 4
AA4
A
44 57Right-handed alpha
Helix 5
AA5
A
66 77Right-handed alpha
Helix 6
AA6
A
90 103Right-handed alpha
Helix 7
AA7
A
105 110Right-handed alpha
Helix 8
AA8
A
114 127Right-handed alpha
Helix 9
AA9
A
139 142Right-handed 310
Helix 10
AB1
A
143 148Right-handed alpha
Helix 11
AB2
A
162 176Right-handed alpha
Helix 12
AB3
A
205 213Right-handed alpha
Helix 13
AB4
A
216 224Right-handed alpha
Helix 14
AB5
A
249 257Right-handed alpha
Helix 15
AB6
B
4 18Right-handed alpha
Helix 16
AB7
B
25 36Right-handed alpha
Helix 17
AB8
B
41 43Right-handed 310
Helix 18
AB9
B
44 57Right-handed alpha
Helix 19
AC1
B
58 61Right-handed 310
Helix 20
AC2
B
66 78Right-handed alpha
Helix 21
AC3
B
87 103Right-handed alpha
Helix 22
AC4
B
111 115Right-handed 310
Helix 23
AC5
B
117 127Right-handed alpha
Helix 24
AC6
B
139 142Right-handed 310
Helix 25
AC7
B
143 150Right-handed alpha
Helix 26
AC8
B
162 176Right-handed alpha
Helix 27
AC9
B
205 213Right-handed alpha
Helix 28
AD1
B
215 224Right-handed alpha
Helix 29
AD2
B
249 258Right-handed alpha
Helix 30
AD3
C
5 16Right-handed alpha
Helix 31
AD4
C
25 36Right-handed alpha
Helix 32
AD5
C
44 57Right-handed alpha
Helix 33
AD6
C
65 77Right-handed alpha
Helix 34
AD7
C
86 103Right-handed alpha
Helix 35
AD8
C
105 112Right-handed alpha
Helix 36
AD9
C
114 127Right-handed alpha
Helix 37
AE1
C
139 142Right-handed 310
Helix 38
AE2
C
143 148Right-handed alpha
Helix 39
AE3
C
162 176Right-handed alpha
Helix 40
AE4
C
205 213Right-handed alpha
Helix 41
AE5
C
215 224Right-handed alpha
Helix 42
AE6
C
248 257Right-handed alpha
Helix 43
AE7
D
7 16Right-handed alpha
Helix 44
AE8
D
25 40Right-handed alpha
Helix 45
AE9
D
43 56Right-handed alpha
Helix 46
AF1
D
67 75Right-handed alpha
Helix 47
AF2
D
88 102Right-handed alpha
Helix 48
AF3
D
105 111Right-handed alpha
Helix 49
AF4
D
114 127Right-handed alpha
Helix 50
AF5
D
139 142Right-handed 310
Helix 51
AF6
D
143 151Right-handed alpha
Helix 52
AF7
D
162 175Right-handed alpha
Helix 53
AF8
D
205 213Right-handed alpha
Helix 54
AF9
D
215 224Right-handed alpha
Helix 55
AG1
D
247 257Right-handed alpha
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There are 5 sheets in PDB entry 6PQB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 186first strand
Strand 2
A
155 160parallel
Strand 3
A
131 135parallel
Strand 4
A
196 203parallel
Strand 5
A
225 234parallel
Strand 6
A
273 279anti-parallel
Strand 7
A
263 270anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 186first strand
Strand 2
B
155 160parallel
Strand 3
B
131 135parallel
Strand 4
B
196 202parallel
Strand 5
B
225 234parallel
Strand 6
B
273 279anti-parallel
Strand 7
B
263 270anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
182 186first strand
Strand 2
C
155 160parallel
Strand 3
C
131 135parallel
Strand 4
C
196 203parallel
Strand 5
C
225 234parallel
Strand 6
C
273 279anti-parallel
Strand 7
C
263 270anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
183 186first strand
Strand 2
D
155 160parallel
Strand 3
D
131 135parallel
Strand 4
D
196 202parallel
Strand 5
D
225 234parallel
Strand 6
D
273 279anti-parallel
Strand 7
D
263 266anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
183 186first strand
Strand 2
D
155 160parallel
Strand 3
D
131 135parallel
Strand 4
D
196 202parallel
Strand 5
D
225 234parallel
Strand 6
D
273 279anti-parallel
Strand 7
D
269 270anti-parallel
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