Analysis of interatomic Contacts of Structural Units in PDB entry:
6PQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PQD entry

There is 1 chain in PDB entry 6PQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 17ALA 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6PQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 33Right-handed alpha
Helix 2
AA2
A
34 45Right-handed alpha
Helix 3
AA3
A
60 69Right-handed alpha
Helix 4
AA4
A
105 116Right-handed alpha
Helix 5
AA5
A
117 143Right-handed alpha
Helix 6
AA6
A
153 165Right-handed alpha
Helix 7
AA7
A
170 172Right-handed 310
Helix 8
AA8
A
173 185Right-handed alpha
Helix 9
AA9
A
189 198Right-handed alpha
Helix 10
AB1
A
199 210Right-handed alpha
Helix 11
AB2
A
211 215Right-handed 310
Helix 12
AB3
A
219 227Right-handed alpha
Helix 13
AB4
A
234 236Right-handed 310
Helix 14
AB5
A
237 249Right-handed alpha
Helix 15
AB6
A
250 267Right-handed alpha
Helix 16
AB7
A
267 277Right-handed alpha
Helix 17
AB8
A
280 293Right-handed alpha
Helix 18
AB9
A
323 327Right-handed alpha
Helix 19
AC1
A
360 378Right-handed alpha
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There are 4 sheets in PDB entry 6PQD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
48 50parallel
Strand 3
A
56 58anti-parallel
Strand 4
A
318 322parallel
Strand 5
A
297 302anti-parallel
Strand 6
A
74 75anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
403 408anti-parallel
Strand 3
A
379 384anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 308first strand
Strand 2
A
311 313anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
389 391first strand
Strand 2
A
398 401anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il