Analysis of interatomic Contacts of Structural Units in PDB entry:
6PQL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PQL entry

There are 4 chains in PDB entry 6PQL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 32	ALA 416
B	THR 33	ALA 416
C	GLY 32	ALA 416
D	THR 33	ALA 416

There are 76 helices in PDB entry 6PQL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	44	Right-handed 310
Helix 2	AA2	A	45	60	Right-handed alpha
Helix 3	AA3	A	72	84	Right-handed alpha
Helix 4	AA4	A	96	106	Right-handed alpha
Helix 5	AA5	A	114	120	Right-handed 310
Helix 6	AA6	A	150	156	Right-handed alpha
Helix 7	AA7	A	163	177	Right-handed alpha
Helix 8	AA8	A	188	191	Right-handed 310
Helix 9	AA9	A	192	205	Right-handed alpha
Helix 10	AB1	A	206	215	Right-handed alpha
Helix 11	AB2	A	226	237	Right-handed alpha
Helix 12	AB3	A	238	241	Right-handed 310
Helix 13	AB4	A	253	264	Right-handed alpha
Helix 14	AB5	A	275	282	Right-handed alpha
Helix 15	AB6	A	319	331	Right-handed alpha
Helix 16	AB7	A	332	341	Right-handed alpha
Helix 17	AB8	A	361	366	Right-handed alpha
Helix 18	AB9	A	376	381	Right-handed 310
Helix 19	AC1	A	384	397	Right-handed alpha
Helix 20	AC2	A	399	416	Right-handed alpha
Helix 21	AC3	B	45	60	Right-handed alpha
Helix 22	AC4	B	72	84	Right-handed alpha
Helix 23	AC5	B	96	103	Right-handed alpha
Helix 24	AC6	B	115	124	Right-handed 310
Helix 25	AC7	B	125	129	Right-handed 310
Helix 26	AC8	B	150	156	Right-handed alpha
Helix 27	AC9	B	163	178	Right-handed alpha
Helix 28	AD1	B	188	191	Right-handed 310
Helix 29	AD2	B	192	205	Right-handed alpha
Helix 30	AD3	B	206	215	Right-handed alpha
Helix 31	AD4	B	226	237	Right-handed alpha
Helix 32	AD5	B	238	241	Right-handed 310
Helix 33	AD6	B	253	263	Right-handed alpha
Helix 34	AD7	B	275	282	Right-handed alpha
Helix 35	AD8	B	319	331	Right-handed alpha
Helix 36	AD9	B	332	341	Right-handed alpha
Helix 37	AE1	B	376	380	Right-handed 310
Helix 38	AE2	B	384	397	Right-handed alpha
Helix 39	AE3	B	399	416	Right-handed alpha
Helix 40	AE4	C	45	60	Right-handed alpha
Helix 41	AE5	C	72	84	Right-handed alpha
Helix 42	AE6	C	96	105	Right-handed alpha
Helix 43	AE7	C	115	120	Right-handed 310
Helix 44	AE8	C	125	129	Right-handed 310
Helix 45	AE9	C	150	156	Right-handed alpha
Helix 46	AF1	C	163	176	Right-handed alpha
Helix 47	AF2	C	188	191	Right-handed 310
Helix 48	AF3	C	192	205	Right-handed alpha
Helix 49	AF4	C	206	215	Right-handed alpha
Helix 50	AF5	C	226	237	Right-handed alpha
Helix 51	AF6	C	253	263	Right-handed alpha
Helix 52	AF7	C	275	281	Right-handed alpha
Helix 53	AF8	C	319	331	Right-handed alpha
Helix 54	AF9	C	332	344	Right-handed alpha
Helix 55	AG1	C	376	381	Right-handed 310
Helix 56	AG2	C	384	397	Right-handed alpha
Helix 57	AG3	C	399	416	Right-handed alpha
Helix 58	AG4	D	45	60	Right-handed alpha
Helix 59	AG5	D	72	84	Right-handed alpha
Helix 60	AG6	D	96	106	Right-handed alpha
Helix 61	AG7	D	114	124	Right-handed 310
Helix 62	AG8	D	125	129	Right-handed 310
Helix 63	AG9	D	150	157	Right-handed alpha
Helix 64	AH1	D	163	177	Right-handed alpha
Helix 65	AH2	D	188	191	Right-handed 310
Helix 66	AH3	D	192	205	Right-handed alpha
Helix 67	AH4	D	207	215	Right-handed alpha
Helix 68	AH5	D	226	238	Right-handed alpha
Helix 69	AH6	D	253	263	Right-handed alpha
Helix 70	AH7	D	275	281	Right-handed alpha
Helix 71	AH8	D	319	331	Right-handed alpha
Helix 72	AH9	D	332	344	Right-handed alpha
Helix 73	AI1	D	376	381	Right-handed 310
Helix 74	AI2	D	384	398	Right-handed alpha
Helix 75	AI3	D	399	412	Right-handed alpha
Helix 76	AI4	D	413	416	Right-handed 310

There are 12 sheets in PDB entry 6PQL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	68	first strand
Strand 2	A	34	39	parallel
Strand 3	A	89	91	parallel
Strand 4	A	310	313	anti-parallel
Strand 5	A	137	138	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	182	first strand
Strand 2	A	266	272	parallel
Strand 3	A	144	149	anti-parallel
Strand 4	A	288	291	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	304	first strand
Strand 2	A	373	374	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	68	first strand
Strand 2	B	34	39	parallel
Strand 3	B	89	91	parallel
Strand 4	B	310	313	anti-parallel
Strand 5	B	137	138	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	182	first strand
Strand 2	B	266	272	parallel
Strand 3	B	144	149	anti-parallel
Strand 4	B	288	291	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	304	first strand
Strand 2	B	373	374	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	68	first strand
Strand 2	C	34	39	parallel
Strand 3	C	89	91	parallel
Strand 4	C	310	313	anti-parallel
Strand 5	C	137	138	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	182	first strand
Strand 2	C	266	272	parallel
Strand 3	C	144	149	anti-parallel
Strand 4	C	288	291	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	303	304	first strand
Strand 2	C	373	374	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	68	first strand
Strand 2	D	34	39	parallel
Strand 3	D	89	91	parallel
Strand 4	D	310	313	anti-parallel
Strand 5	D	137	138	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	180	182	first strand
Strand 2	D	266	272	parallel
Strand 3	D	144	149	anti-parallel
Strand 4	D	288	291	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	303	304	first strand
Strand 2	D	373	374	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PQL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PQL