Analysis of interatomic Contacts of Structural Units in PDB entry:
6PQQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PQQ entry

There are 4 chains in PDB entry 6PQQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 446	GLU 1079
B	LYS 446	GLU 1079
D	LYS 446	GLU 1079
C	LYS 446	GLU 1079

There are136 helices in PDB entry 6PQQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	446	456	Right-handed alpha
Helix 2	AA2	A	458	466	Right-handed alpha
Helix 3	AA3	A	484	492	Right-handed alpha
Helix 4	AA4	A	494	504	Right-handed alpha
Helix 5	AA5	A	516	525	Right-handed alpha
Helix 6	AA6	A	526	535	Right-handed alpha
Helix 7	AA7	A	537	541	Right-handed 310
Helix 8	AA8	A	550	558	Right-handed alpha
Helix 9	AA9	A	560	570	Right-handed alpha
Helix 10	AB1	A	582	589	Right-handed alpha
Helix 11	AB2	A	592	601	Right-handed alpha
Helix 12	AB3	A	604	611	Right-handed alpha
Helix 13	AB4	A	621	629	Right-handed alpha
Helix 14	AB5	A	630	640	Right-handed alpha
Helix 15	AB6	A	683	692	Right-handed alpha
Helix 16	AB7	A	694	699	Right-handed alpha
Helix 17	AB8	A	700	740	Right-handed alpha
Helix 18	AB9	A	766	796	Right-handed alpha
Helix 19	AC1	A	802	820	Right-handed alpha
Helix 20	AC2	A	821	823	Right-handed 310
Helix 21	AC3	A	827	850	Right-handed alpha
Helix 22	AC4	A	851	853	Right-handed 310
Helix 23	AC5	A	856	892	Right-handed alpha
Helix 24	AC6	A	895	899	Right-handed 310
Helix 25	AC7	A	900	912	Right-handed alpha
Helix 26	AC8	A	917	922	Right-handed alpha
Helix 27	AC9	A	922	928	Right-handed alpha
Helix 28	AD1	A	933	948	Right-handed alpha
Helix 29	AD2	A	950	969	Right-handed alpha
Helix 30	AD3	A	970	987	Right-handed alpha
Helix 31	AD4	A	991	999	Right-handed alpha
Helix 32	AD5	A	1012	1012	Right-handed alpha
Helix 33	AD6	A	1016	1025	Right-handed alpha
Helix 34	AD7	A	1040	1072	Right-handed alpha
Helix 35	AD8	B	447	456	Right-handed alpha
Helix 36	AD9	B	458	466	Right-handed alpha
Helix 37	AE1	B	484	492	Right-handed alpha
Helix 38	AE2	B	494	504	Right-handed alpha
Helix 39	AE3	B	516	525	Right-handed alpha
Helix 40	AE4	B	526	535	Right-handed alpha
Helix 41	AE5	B	537	541	Right-handed 310
Helix 42	AE6	B	550	558	Right-handed alpha
Helix 43	AE7	B	560	570	Right-handed alpha
Helix 44	AE8	B	582	589	Right-handed alpha
Helix 45	AE9	B	592	601	Right-handed alpha
Helix 46	AF1	B	604	611	Right-handed alpha
Helix 47	AF2	B	621	629	Right-handed alpha
Helix 48	AF3	B	630	640	Right-handed alpha
Helix 49	AF4	B	683	692	Right-handed alpha
Helix 50	AF5	B	694	699	Right-handed alpha
Helix 51	AF6	B	700	740	Right-handed alpha
Helix 52	AF7	B	766	796	Right-handed alpha
Helix 53	AF8	B	802	820	Right-handed alpha
Helix 54	AF9	B	821	823	Right-handed 310
Helix 55	AG1	B	827	850	Right-handed alpha
Helix 56	AG2	B	851	853	Right-handed 310
Helix 57	AG3	B	856	892	Right-handed alpha
Helix 58	AG4	B	895	899	Right-handed 310
Helix 59	AG5	B	900	912	Right-handed alpha
Helix 60	AG6	B	917	922	Right-handed alpha
Helix 61	AG7	B	922	928	Right-handed alpha
Helix 62	AG8	B	933	948	Right-handed alpha
Helix 63	AG9	B	950	969	Right-handed alpha
Helix 64	AH1	B	970	987	Right-handed alpha
Helix 65	AH2	B	991	999	Right-handed alpha
Helix 66	AH3	B	1012	1012	Right-handed alpha
Helix 67	AH4	B	1016	1025	Right-handed alpha
Helix 68	AH5	B	1040	1072	Right-handed alpha
Helix 69	AH6	D	447	456	Right-handed alpha
Helix 70	AH7	D	458	466	Right-handed alpha
Helix 71	AH8	D	484	492	Right-handed alpha
Helix 72	AH9	D	494	504	Right-handed alpha
Helix 73	AI1	D	516	525	Right-handed alpha
Helix 74	AI2	D	526	535	Right-handed alpha
Helix 75	AI3	D	537	541	Right-handed 310
Helix 76	AI4	D	550	558	Right-handed alpha
Helix 77	AI5	D	560	570	Right-handed alpha
Helix 78	AI6	D	582	589	Right-handed alpha
Helix 79	AI7	D	592	601	Right-handed alpha
Helix 80	AI8	D	604	611	Right-handed alpha
Helix 81	AI9	D	621	629	Right-handed alpha
Helix 82	AJ1	D	630	640	Right-handed alpha
Helix 83	AJ2	D	683	692	Right-handed alpha
Helix 84	AJ3	D	694	699	Right-handed alpha
Helix 85	AJ4	D	700	740	Right-handed alpha
Helix 86	AJ5	D	766	796	Right-handed alpha
Helix 87	AJ6	D	802	820	Right-handed alpha
Helix 88	AJ7	D	821	823	Right-handed 310
Helix 89	AJ8	D	827	850	Right-handed alpha
Helix 90	AJ9	D	851	853	Right-handed 310
Helix 91	AK1	D	856	892	Right-handed alpha
Helix 92	AK2	D	895	899	Right-handed 310
Helix 93	AK3	D	900	912	Right-handed alpha
Helix 94	AK4	D	917	922	Right-handed alpha
Helix 95	AK5	D	922	928	Right-handed alpha
Helix 96	AK6	D	933	948	Right-handed alpha
Helix 97	AK7	D	950	969	Right-handed alpha
Helix 98	AK8	D	970	987	Right-handed alpha
Helix 99	AK9	D	991	999	Right-handed alpha
Helix 100	AL1	D	1012	1012	Right-handed alpha
Helix 101	AL2	D	1016	1025	Right-handed alpha
Helix 102	AL3	D	1040	1072	Right-handed alpha
Helix 103	AL4	C	447	456	Right-handed alpha
Helix 104	AL5	C	458	466	Right-handed alpha
Helix 105	AL6	C	484	492	Right-handed alpha
Helix 106	AL7	C	494	504	Right-handed alpha
Helix 107	AL8	C	516	525	Right-handed alpha
Helix 108	AL9	C	526	535	Right-handed alpha
Helix 109	AM1	C	537	541	Right-handed 310
Helix 110	AM2	C	550	558	Right-handed alpha
Helix 111	AM3	C	560	570	Right-handed alpha
Helix 112	AM4	C	582	589	Right-handed alpha
Helix 113	AM5	C	592	601	Right-handed alpha
Helix 114	AM6	C	604	611	Right-handed alpha
Helix 115	AM7	C	621	629	Right-handed alpha
Helix 116	AM8	C	630	640	Right-handed alpha
Helix 117	AM9	C	683	692	Right-handed alpha
Helix 118	AN1	C	694	699	Right-handed alpha
Helix 119	AN2	C	700	740	Right-handed alpha
Helix 120	AN3	C	766	796	Right-handed alpha
Helix 121	AN4	C	802	820	Right-handed alpha
Helix 122	AN5	C	821	823	Right-handed 310
Helix 123	AN6	C	827	850	Right-handed alpha
Helix 124	AN7	C	851	853	Right-handed 310
Helix 125	AN8	C	856	892	Right-handed alpha
Helix 126	AN9	C	895	899	Right-handed 310
Helix 127	AO1	C	900	912	Right-handed alpha
Helix 128	AO2	C	917	922	Right-handed alpha
Helix 129	AO3	C	922	928	Right-handed alpha
Helix 130	AO4	C	933	948	Right-handed alpha
Helix 131	AO5	C	950	969	Right-handed alpha
Helix 132	AO6	C	970	987	Right-handed alpha
Helix 133	AO7	C	991	999	Right-handed alpha
Helix 134	AO8	C	1012	1012	Right-handed alpha
Helix 135	AO9	C	1016	1025	Right-handed alpha
Helix 136	AP1	C	1040	1072	Right-handed alpha

There are 8 sheets in PDB entry 6PQQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	644	first strand
Strand 2	A	656	659	anti-parallel
Strand 3	A	1002	1005	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	745	746	first strand
Strand 2	A	751	752	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	644	first strand
Strand 2	B	656	659	anti-parallel
Strand 3	B	1002	1005	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	745	746	first strand
Strand 2	B	751	752	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	642	644	first strand
Strand 2	D	656	659	anti-parallel
Strand 3	D	1002	1005	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	745	746	first strand
Strand 2	D	751	752	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	644	first strand
Strand 2	C	656	659	anti-parallel
Strand 3	C	1002	1005	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	745	746	first strand
Strand 2	C	751	752	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PQQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PQQ