Analysis of interatomic Contacts of Structural Units in PDB entry:
6PQU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PQU entry

There are 8 chains in PDB entry 6PQU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 21HIS 508
B
 A 2 T 16
C
 C 17 A 32
D
 T 1 T 31
E
 SER 21HIS 508
F
 A 2 T 16
G
 C 17 A 32
H
 T 1 T 31
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6PQU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 36Right-handed alpha
Helix 2
AA2
A
39 53Right-handed alpha
Helix 3
AA3
A
61 72Right-handed alpha
Helix 4
AA4
A
89 106Right-handed alpha
Helix 5
AA5
A
171 175Right-handed 310
Helix 6
AA6
A
186 204Right-handed alpha
Helix 7
AA7
A
224 233Right-handed alpha
Helix 8
AA8
A
264 272Right-handed alpha
Helix 9
AA9
A
276 290Right-handed alpha
Helix 10
AB1
A
301 321Right-handed alpha
Helix 11
AB2
A
337 346Right-handed alpha
Helix 12
AB3
A
347 356Right-handed alpha
Helix 13
AB4
A
358 375Right-handed alpha
Helix 14
AB5
A
379 398Right-handed alpha
Helix 15
AB6
A
404 412Right-handed alpha
Helix 16
AB7
A
414 422Right-handed alpha
Helix 17
AB8
A
430 447Right-handed alpha
Helix 18
AB9
A
454 468Right-handed alpha
Helix 19
AC1
E
25 36Right-handed alpha
Helix 20
AC2
E
39 53Right-handed alpha
Helix 21
AC3
E
61 72Right-handed alpha
Helix 22
AC4
E
89 106Right-handed alpha
Helix 23
AC5
E
171 175Right-handed 310
Helix 24
AC6
E
186 204Right-handed alpha
Helix 25
AC7
E
224 233Right-handed alpha
Helix 26
AC8
E
264 272Right-handed alpha
Helix 27
AC9
E
276 290Right-handed alpha
Helix 28
AD1
E
301 321Right-handed alpha
Helix 29
AD2
E
337 346Right-handed alpha
Helix 30
AD3
E
347 356Right-handed alpha
Helix 31
AD4
E
358 375Right-handed alpha
Helix 32
AD5
E
379 398Right-handed alpha
Helix 33
AD6
E
404 412Right-handed alpha
Helix 34
AD7
E
414 422Right-handed alpha
Helix 35
AD8
E
430 447Right-handed alpha
Helix 36
AD9
E
454 468Right-handed alpha
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There are 4 sheets in PDB entry 6PQU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
85 88anti-parallel
Strand 3
A
179 181anti-parallel
Strand 4
A
145 158anti-parallel
Strand 5
A
161 165anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
145 158anti-parallel
Strand 3
A
116 124anti-parallel
Strand 4
A
212 223parallel
Strand 5
A
207 209anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
79 82first strand
Strand 2
E
85 88anti-parallel
Strand 3
E
179 181anti-parallel
Strand 4
E
145 158anti-parallel
Strand 5
E
161 165anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
127 128first strand
Strand 2
E
145 158anti-parallel
Strand 3
E
116 124anti-parallel
Strand 4
E
212 223parallel
Strand 5
E
207 209anti-parallel
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