Analysis of interatomic Contacts of Structural Units in PDB entry:
6PQX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PQX entry

There are 8 chains in PDB entry 6PQX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 21ASP 500
B
 T 3 T 16
C
 C 17 A 32
D
 T 1 A 30
E
 SER 21ASP 500
F
 T 3 T 16
G
 C 17 A 32
H
 T 1 A 30
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 44 helices in PDB entry 6PQX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 37Right-handed alpha
Helix 2
AA2
A
39 53Right-handed alpha
Helix 3
AA3
A
61 73Right-handed alpha
Helix 4
AA4
A
89 105Right-handed alpha
Helix 5
AA5
A
171 175Right-handed 310
Helix 6
AA6
A
186 203Right-handed alpha
Helix 7
AA7
A
224 232Right-handed alpha
Helix 8
AA8
A
246 251Right-handed alpha
Helix 9
AA9
A
253 258Right-handed alpha
Helix 10
AB1
A
264 268Right-handed 310
Helix 11
AB2
A
271 290Right-handed alpha
Helix 12
AB3
A
301 322Right-handed alpha
Helix 13
AB4
A
338 347Right-handed alpha
Helix 14
AB5
A
347 356Right-handed alpha
Helix 15
AB6
A
358 375Right-handed alpha
Helix 16
AB7
A
379 398Right-handed alpha
Helix 17
AB8
A
404 412Right-handed alpha
Helix 18
AB9
A
413 421Right-handed alpha
Helix 19
AC1
A
431 448Right-handed alpha
Helix 20
AC2
A
453 469Right-handed alpha
Helix 21
AC3
A
470 476Right-handed alpha
Helix 22
AC4
A
489 496Right-handed alpha
Helix 23
AC5
E
25 37Right-handed alpha
Helix 24
AC6
E
39 53Right-handed alpha
Helix 25
AC7
E
61 73Right-handed alpha
Helix 26
AC8
E
89 105Right-handed alpha
Helix 27
AC9
E
171 175Right-handed 310
Helix 28
AD1
E
186 203Right-handed alpha
Helix 29
AD2
E
224 232Right-handed alpha
Helix 30
AD3
E
246 251Right-handed alpha
Helix 31
AD4
E
253 258Right-handed alpha
Helix 32
AD5
E
264 268Right-handed 310
Helix 33
AD6
E
271 290Right-handed alpha
Helix 34
AD7
E
301 322Right-handed alpha
Helix 35
AD8
E
338 347Right-handed alpha
Helix 36
AD9
E
347 356Right-handed alpha
Helix 37
AE1
E
358 375Right-handed alpha
Helix 38
AE2
E
379 398Right-handed alpha
Helix 39
AE3
E
404 412Right-handed alpha
Helix 40
AE4
E
413 421Right-handed alpha
Helix 41
AE5
E
431 448Right-handed alpha
Helix 42
AE6
E
453 469Right-handed alpha
Helix 43
AE7
E
470 476Right-handed alpha
Helix 44
AE8
E
489 496Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6PQX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
85 88anti-parallel
Strand 3
A
176 181anti-parallel
Strand 4
A
146 157anti-parallel
Strand 5
A
162 165anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
85 88anti-parallel
Strand 3
A
176 181anti-parallel
Strand 4
A
146 157anti-parallel
Strand 5
A
116 127anti-parallel
Strand 6
A
213 222parallel
Strand 7
A
207 208anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
79 81first strand
Strand 2
E
85 88anti-parallel
Strand 3
E
176 181anti-parallel
Strand 4
E
146 157anti-parallel
Strand 5
E
162 165anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
79 81first strand
Strand 2
E
85 88anti-parallel
Strand 3
E
176 181anti-parallel
Strand 4
E
146 157anti-parallel
Strand 5
E
116 127anti-parallel
Strand 6
E
213 222parallel
Strand 7
E
207 208anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il