Analysis of interatomic Contacts of Structural Units in PDB entry:
6PRM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PRM entry

There are 4 chains in PDB entry 6PRM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 27	PRO 473
B	SER 27	PRO 473
C	SER 27	PRO 473
D	LYS 28	PRO 473

There are 76 helices in PDB entry 6PRM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	48	Right-handed 310
Helix 2	AA2	A	54	63	Right-handed alpha
Helix 3	AA3	A	76	87	Right-handed alpha
Helix 4	AA4	A	89	94	Right-handed 310
Helix 5	AA5	A	111	115	Right-handed 310
Helix 6	AA6	A	123	130	Right-handed alpha
Helix 7	AA7	A	146	154	Right-handed 310
Helix 8	AA8	A	173	179	Right-handed alpha
Helix 9	AA9	A	183	188	Right-handed 310
Helix 10	AB1	A	202	218	Right-handed alpha
Helix 11	AB2	A	239	244	Right-handed alpha
Helix 12	AB3	A	250	277	Right-handed alpha
Helix 13	AB4	A	279	281	Right-handed 310
Helix 14	AB5	A	294	299	Right-handed alpha
Helix 15	AB6	A	313	317	Right-handed alpha
Helix 16	AB7	A	343	352	Right-handed alpha
Helix 17	AB8	A	366	371	Right-handed alpha
Helix 18	AB9	A	426	442	Right-handed alpha
Helix 19	AC1	A	454	466	Right-handed alpha
Helix 20	AC2	B	44	48	Right-handed 310
Helix 21	AC3	B	54	63	Right-handed alpha
Helix 22	AC4	B	76	87	Right-handed alpha
Helix 23	AC5	B	89	94	Right-handed 310
Helix 24	AC6	B	111	115	Right-handed 310
Helix 25	AC7	B	123	130	Right-handed alpha
Helix 26	AC8	B	146	154	Right-handed 310
Helix 27	AC9	B	173	179	Right-handed alpha
Helix 28	AD1	B	183	188	Right-handed 310
Helix 29	AD2	B	202	218	Right-handed alpha
Helix 30	AD3	B	239	244	Right-handed alpha
Helix 31	AD4	B	250	277	Right-handed alpha
Helix 32	AD5	B	279	281	Right-handed 310
Helix 33	AD6	B	294	299	Right-handed alpha
Helix 34	AD7	B	313	317	Right-handed alpha
Helix 35	AD8	B	343	352	Right-handed alpha
Helix 36	AD9	B	366	371	Right-handed alpha
Helix 37	AE1	B	426	442	Right-handed alpha
Helix 38	AE2	B	454	466	Right-handed alpha
Helix 39	AE3	C	44	48	Right-handed 310
Helix 40	AE4	C	54	63	Right-handed alpha
Helix 41	AE5	C	76	87	Right-handed alpha
Helix 42	AE6	C	89	94	Right-handed 310
Helix 43	AE7	C	111	115	Right-handed 310
Helix 44	AE8	C	123	130	Right-handed alpha
Helix 45	AE9	C	146	154	Right-handed 310
Helix 46	AF1	C	173	179	Right-handed alpha
Helix 47	AF2	C	183	188	Right-handed 310
Helix 48	AF3	C	202	218	Right-handed alpha
Helix 49	AF4	C	239	244	Right-handed alpha
Helix 50	AF5	C	250	277	Right-handed alpha
Helix 51	AF6	C	279	281	Right-handed 310
Helix 52	AF7	C	294	299	Right-handed alpha
Helix 53	AF8	C	313	317	Right-handed alpha
Helix 54	AF9	C	343	352	Right-handed alpha
Helix 55	AG1	C	366	371	Right-handed alpha
Helix 56	AG2	C	426	442	Right-handed alpha
Helix 57	AG3	C	454	466	Right-handed alpha
Helix 58	AG4	D	44	48	Right-handed 310
Helix 59	AG5	D	54	63	Right-handed alpha
Helix 60	AG6	D	76	87	Right-handed alpha
Helix 61	AG7	D	89	94	Right-handed 310
Helix 62	AG8	D	111	115	Right-handed 310
Helix 63	AG9	D	123	130	Right-handed alpha
Helix 64	AH1	D	146	154	Right-handed 310
Helix 65	AH2	D	173	179	Right-handed alpha
Helix 66	AH3	D	183	188	Right-handed 310
Helix 67	AH4	D	202	218	Right-handed alpha
Helix 68	AH5	D	239	244	Right-handed alpha
Helix 69	AH6	D	250	277	Right-handed alpha
Helix 70	AH7	D	279	281	Right-handed 310
Helix 71	AH8	D	294	299	Right-handed alpha
Helix 72	AH9	D	313	317	Right-handed alpha
Helix 73	AI1	D	343	352	Right-handed alpha
Helix 74	AI2	D	366	371	Right-handed alpha
Helix 75	AI3	D	426	442	Right-handed alpha
Helix 76	AI4	D	454	466	Right-handed alpha

There are 12 sheets in PDB entry 6PRM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	196	first strand
Strand 2	A	190	191	anti-parallel
Strand 3	A	158	162	anti-parallel
Strand 4	A	134	140	parallel
Strand 5	A	223	228	parallel
Strand 6	A	30	36	parallel
Strand 7	A	283	289	parallel
Strand 8	A	322	324	anti-parallel
Strand 9	A	65	67	anti-parallel
Strand 10	A	333	335	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	319	first strand
Strand 2	A	70	71	anti-parallel
Strand 3	A	339	340	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	386	first strand
Strand 2	A	389	394	anti-parallel
Strand 3	A	397	401	anti-parallel
Strand 4	A	408	411	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	196	first strand
Strand 2	B	190	191	anti-parallel
Strand 3	B	158	162	anti-parallel
Strand 4	B	134	140	parallel
Strand 5	B	223	228	parallel
Strand 6	B	30	36	parallel
Strand 7	B	283	289	parallel
Strand 8	B	322	324	anti-parallel
Strand 9	B	65	67	anti-parallel
Strand 10	B	333	335	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	319	first strand
Strand 2	B	70	71	anti-parallel
Strand 3	B	339	340	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	386	first strand
Strand 2	B	389	394	anti-parallel
Strand 3	B	397	401	anti-parallel
Strand 4	B	408	411	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	196	first strand
Strand 2	C	190	191	anti-parallel
Strand 3	C	158	162	anti-parallel
Strand 4	C	134	140	parallel
Strand 5	C	223	228	parallel
Strand 6	C	30	36	parallel
Strand 7	C	283	289	parallel
Strand 8	C	322	324	anti-parallel
Strand 9	C	65	67	anti-parallel
Strand 10	C	333	335	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	319	first strand
Strand 2	C	70	71	anti-parallel
Strand 3	C	339	340	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	381	386	first strand
Strand 2	C	389	394	anti-parallel
Strand 3	C	397	401	anti-parallel
Strand 4	C	408	411	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	196	first strand
Strand 2	D	190	191	anti-parallel
Strand 3	D	158	162	anti-parallel
Strand 4	D	134	140	parallel
Strand 5	D	223	228	parallel
Strand 6	D	30	36	parallel
Strand 7	D	283	289	parallel
Strand 8	D	322	324	anti-parallel
Strand 9	D	65	67	anti-parallel
Strand 10	D	333	335	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	318	319	first strand
Strand 2	D	70	71	anti-parallel
Strand 3	D	339	340	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	381	386	first strand
Strand 2	D	389	394	anti-parallel
Strand 3	D	397	401	anti-parallel
Strand 4	D	408	411	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PRM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PRM