Analysis of interatomic Contacts of Structural Units in PDB entry:
6PRU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PRU entry

There are 2 chains in PDB entry 6PRU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 435HIS 584
B
 SER 435HIS 584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6PRU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
435 456Right-handed alpha
Helix 2
AA2
A
493 499Right-handed alpha
Helix 3
AA3
A
499 505Right-handed alpha
Helix 4
AA4
A
513 517Right-handed 310
Helix 5
AA5
A
520 528Right-handed alpha
Helix 6
AA6
A
562 584Right-handed alpha
Helix 7
AA7
B
436 456Right-handed alpha
Helix 8
AA8
B
493 498Right-handed alpha
Helix 9
AA9
B
499 505Right-handed alpha
Helix 10
AB1
B
513 517Right-handed 310
Helix 11
AB2
B
520 528Right-handed alpha
Helix 12
AB3
B
562 584Right-handed alpha
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There are 2 sheets in PDB entry 6PRU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
489 490first strand
Strand 2
A
471 478anti-parallel
Strand 3
A
459 465anti-parallel
Strand 4
A
545 554anti-parallel
Strand 5
A
534 542anti-parallel
Strand 6
A
509 511anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
489 490first strand
Strand 2
B
471 478anti-parallel
Strand 3
B
459 465anti-parallel
Strand 4
B
545 555anti-parallel
Strand 5
B
532 542anti-parallel
Strand 6
B
509 511anti-parallel
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