Analysis of interatomic Contacts of Structural Units in PDB entry:
6PRX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PRX entry

There are 6 chains in PDB entry 6PRX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3LEU 107
A
 LEU 109ALA 314
A
 GLN 316VAL 365
B
 SER 3LEU 107
B
 LEU 109ALA 314
B
 GLN 316VAL 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6PRX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 70Right-handed alpha
Helix 2
AA2
A
92 107Right-handed alpha
Helix 3
AA3
A
113 128Right-handed alpha
Helix 4
AA4
A
129 132Right-handed 310
Helix 5
AA5
A
203 208Right-handed 310
Helix 6
AA6
A
209 219Right-handed alpha
Helix 7
AA7
A
268 282Right-handed alpha
Helix 8
AA8
A
293 302Right-handed alpha
Helix 9
AA9
A
334 338Right-handed 310
Helix 10
AB1
A
339 354Right-handed alpha
Helix 11
AB2
B
65 70Right-handed alpha
Helix 12
AB3
B
92 107Right-handed alpha
Helix 13
AB4
B
113 128Right-handed alpha
Helix 14
AB5
B
129 132Right-handed 310
Helix 15
AB6
B
203 208Right-handed 310
Helix 16
AB7
B
209 219Right-handed alpha
Helix 17
AB8
B
268 282Right-handed alpha
Helix 18
AB9
B
292 302Right-handed alpha
Helix 19
AC1
B
334 338Right-handed 310
Helix 20
AC2
B
339 354Right-handed alpha
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There are 9 sheets in PDB entry 6PRX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
52 55parallel
Strand 3
A
37 43anti-parallel
Strand 4
A
161 170anti-parallel
Strand 5
A
139 148anti-parallel
Strand 6
A
73 75anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
52 55parallel
Strand 3
A
37 43anti-parallel
Strand 4
A
161 170anti-parallel
Strand 5
A
139 148anti-parallel
Strand 6
A
78 82anti-parallel
Strand 7
A
88 91anti-parallel
Strand 8
A
362 364anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
B
59 61anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 242first strand
Strand 2
A
234 238anti-parallel
Strand 3
A
224 229anti-parallel
Strand 4
A
182 186parallel
Strand 5
A
319 324parallel
Strand 6
A
291 292first strand
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 288first strand
Strand 2
A
254 258parallel
Strand 3
A
244 248anti-parallel
Strand 4
A
305 309anti-parallel
Strand 5
A
319 324anti-parallel
Strand 6
A
182 186parallel
Strand 7
A
224 229parallel
Strand 8
A
234 238anti-parallel
Strand 9
A
329 331first strand
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
52 55parallel
Strand 3
B
37 43anti-parallel
Strand 4
B
161 170anti-parallel
Strand 5
B
139 148anti-parallel
Strand 6
B
73 75anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
52 55parallel
Strand 3
B
37 43anti-parallel
Strand 4
B
161 170anti-parallel
Strand 5
B
139 148anti-parallel
Strand 6
B
78 82anti-parallel
Strand 7
B
88 91anti-parallel
Strand 8
B
362 364anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 288first strand
Strand 2
B
254 258parallel
Strand 3
B
241 248anti-parallel
Strand 4
B
234 238anti-parallel
Strand 5
B
224 229anti-parallel
Strand 6
B
182 186parallel
Strand 7
B
318 325parallel
Strand 8
B
328 331anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 288first strand
Strand 2
B
254 258parallel
Strand 3
B
241 248anti-parallel
Strand 4
B
305 311anti-parallel
Strand 5
B
318 325anti-parallel
Strand 6
B
328 331anti-parallel
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