Analysis of interatomic Contacts of Structural Units in PDB entry:
6PSJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PSJ entry

There are 2 chains in PDB entry 6PSJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 307HIS 550
B
 ALA 307ASP 545
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6PSJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
311 323Right-handed alpha
Helix 2
AA2
A
342 362Right-handed alpha
Helix 3
AA3
A
366 370Right-handed 310
Helix 4
AA4
A
371 395Right-handed alpha
Helix 5
AA5
A
412 417Right-handed alpha
Helix 6
AA6
A
420 439Right-handed alpha
Helix 7
AA7
A
441 456Right-handed alpha
Helix 8
AA8
A
465 493Right-handed alpha
Helix 9
AA9
A
496 528Right-handed alpha
Helix 10
AB1
A
535 545Right-handed alpha
Helix 11
AB2
B
311 323Right-handed alpha
Helix 12
AB3
B
342 363Right-handed alpha
Helix 13
AB4
B
366 370Right-handed 310
Helix 14
AB5
B
371 395Right-handed alpha
Helix 15
AB6
B
412 416Right-handed alpha
Helix 16
AB7
B
421 439Right-handed alpha
Helix 17
AB8
B
441 456Right-handed alpha
Helix 18
AB9
B
473 492Right-handed alpha
Helix 19
AC1
B
496 527Right-handed alpha
Helix 20
AC2
B
535 544Right-handed alpha
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There are 2 sheets in PDB entry 6PSJ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 405first strand
Strand 2
A
408 411anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 405first strand
Strand 2
B
408 411anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il