Analysis of interatomic Contacts of Structural Units in PDB entry:
6PSP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PSP entry

There are 4 chains in PDB entry 6PSP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 2	LYS 192
B	LYS 2	LYS 192
C	LYS 2	LYS 192
D	LYS 2	GLN 58

There are 51 helices in PDB entry 6PSP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	28	Right-handed alpha
Helix 2	AA2	A	29	31	Right-handed 310
Helix 3	AA3	A	39	50	Right-handed alpha
Helix 4	AA4	A	58	62	Right-handed 310
Helix 5	AA5	A	63	85	Right-handed alpha
Helix 6	AA6	A	106	114	Right-handed alpha
Helix 7	AA7	A	124	134	Right-handed alpha
Helix 8	AA8	A	144	167	Right-handed alpha
Helix 9	AA9	A	179	191	Right-handed alpha
Helix 10	AB1	B	15	28	Right-handed alpha
Helix 11	AB2	B	39	51	Right-handed alpha
Helix 12	AB3	B	55	59	Right-handed 310
Helix 13	AB4	B	63	85	Right-handed alpha
Helix 14	AB5	B	106	114	Right-handed alpha
Helix 15	AB6	B	124	134	Right-handed alpha
Helix 16	AB7	B	144	167	Right-handed alpha
Helix 17	AB8	B	179	191	Right-handed alpha
Helix 18	AB9	C	15	30	Right-handed alpha
Helix 19	AC1	C	39	48	Right-handed alpha
Helix 20	AC2	C	56	60	Right-handed 310
Helix 21	AC3	C	63	83	Right-handed alpha
Helix 22	AC4	C	106	114	Right-handed alpha
Helix 23	AC5	C	124	135	Right-handed alpha
Helix 24	AC6	C	144	167	Right-handed alpha
Helix 25	AC7	C	179	191	Right-handed alpha
Helix 26	AC8	D	15	28	Right-handed alpha
Helix 27	AC9	D	29	31	Right-handed 310
Helix 28	AD1	D	39	50	Right-handed alpha
Helix 29	AD2	D	55	59	Right-handed 310
Helix 30	AD3	D	63	83	Right-handed alpha
Helix 31	AD4	D	106	114	Right-handed alpha
Helix 32	AD5	D	124	134	Right-handed alpha
Helix 33	AD6	D	144	167	Right-handed alpha
Helix 34	AD7	D	179	191	Right-handed alpha
Helix 35	AD8	E	15	28	Right-handed alpha
Helix 36	AD9	E	29	31	Right-handed 310
Helix 37	AE1	E	39	48	Right-handed alpha
Helix 38	AE2	E	55	59	Right-handed 310
Helix 39	AE3	E	63	83	Right-handed alpha
Helix 40	AE4	E	106	114	Right-handed alpha
Helix 41	AE5	E	124	134	Right-handed alpha
Helix 42	AE6	E	144	167	Right-handed alpha
Helix 43	AE7	E	179	191	Right-handed alpha
Helix 44	AE8	F	15	28	Right-handed alpha
Helix 45	AE9	F	29	31	Right-handed 310
Helix 46	AF1	F	39	51	Right-handed alpha
Helix 47	AF2	F	63	82	Right-handed alpha
Helix 48	AF3	F	106	114	Right-handed alpha
Helix 49	AF4	F	124	134	Right-handed alpha
Helix 50	AF5	F	144	167	Right-handed alpha
Helix 51	AF6	F	179	191	Right-handed alpha

There are 12 sheets in PDB entry 6PSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	38	first strand
Strand 2	A	87	90	parallel
Strand 3	A	5	9	parallel
Strand 4	A	117	122	parallel
Strand 5	A	169	174	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	97	first strand
Strand 2	A	100	103	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	38	first strand
Strand 2	B	87	91	parallel
Strand 3	B	5	9	parallel
Strand 4	B	117	122	parallel
Strand 5	B	169	174	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	97	first strand
Strand 2	B	100	103	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	38	first strand
Strand 2	C	87	90	parallel
Strand 3	C	5	9	parallel
Strand 4	C	117	122	parallel
Strand 5	C	169	174	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	97	first strand
Strand 2	C	100	103	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	38	first strand
Strand 2	D	87	90	parallel
Strand 3	D	5	9	parallel
Strand 4	D	117	122	parallel
Strand 5	D	169	174	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	97	first strand
Strand 2	D	100	103	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	38	first strand
Strand 2	E	87	90	parallel
Strand 3	E	5	9	parallel
Strand 4	E	117	122	parallel
Strand 5	E	169	174	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	97	first strand
Strand 2	E	100	103	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	38	first strand
Strand 2	F	87	91	parallel
Strand 3	F	5	10	parallel
Strand 4	F	117	122	parallel
Strand 5	F	169	174	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	94	97	first strand
Strand 2	F	100	103	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PSP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PSP