Analysis of interatomic Contacts of Structural Units in PDB entry:
6PSY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PSY entry

There are 2 chains in PDB entry 6PSY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 196ALA 1309
E
 LYS 21ARG 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 59 helices in PDB entry 6PSY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
212 223Right-handed alpha
Helix 2
AA2
A
224 236Right-handed alpha
Helix 3
AA3
A
237 239Right-handed 310
Helix 4
AA4
A
248 281Right-handed alpha
Helix 5
AA5
A
327 331Right-handed 310
Helix 6
AA6
A
396 400Right-handed 310
Helix 7
AA7
A
438 473Right-handed alpha
Helix 8
AA8
A
486 502Right-handed alpha
Helix 9
AA9
A
503 506Right-handed 310
Helix 10
AB1
A
510 526Right-handed alpha
Helix 11
AB2
A
548 553Right-handed 310
Helix 12
AB3
A
600 612Right-handed alpha
Helix 13
AB4
A
619 633Right-handed alpha
Helix 14
AB5
A
652 664Right-handed alpha
Helix 15
AB6
A
723 728Right-handed alpha
Helix 16
AB7
A
729 731Right-handed 310
Helix 17
AB8
A
732 737Right-handed alpha
Helix 18
AB9
A
738 751Right-handed alpha
Helix 19
AC1
A
765 781Right-handed alpha
Helix 20
AC2
A
785 797Right-handed alpha
Helix 21
AC3
A
816 826Right-handed alpha
Helix 22
AC4
A
838 849Right-handed alpha
Helix 23
AC5
A
867 881Right-handed alpha
Helix 24
AC6
A
889 892Right-handed 310
Helix 25
AC7
A
899 904Right-handed alpha
Helix 26
AC8
A
910 919Right-handed alpha
Helix 27
AC9
A
930 944Right-handed alpha
Helix 28
AD1
A
958 964Right-handed alpha
Helix 29
AD2
A
977 982Right-handed alpha
Helix 30
AD3
A
991 999Right-handed alpha
Helix 31
AD4
A
1001 1023Right-handed alpha
Helix 32
AD5
A
1024 1029Right-handed alpha
Helix 33
AD6
A
1029 1034Right-handed alpha
Helix 34
AD7
A
1042 1050Right-handed alpha
Helix 35
AD8
A
1055 1063Right-handed alpha
Helix 36
AD9
A
1071 1076Right-handed alpha
Helix 37
AE1
A
1077 1079Right-handed 310
Helix 38
AE2
A
1080 1085Right-handed alpha
Helix 39
AE3
A
1090 1116Right-handed alpha
Helix 40
AE4
A
1117 1120Right-handed 310
Helix 41
AE5
A
1130 1153Right-handed alpha
Helix 42
AE6
A
1160 1165Right-handed alpha
Helix 43
AE7
A
1165 1183Right-handed alpha
Helix 44
AE8
A
1189 1193Right-handed 310
Helix 45
AE9
A
1194 1200Right-handed alpha
Helix 46
AF1
A
1202 1230Right-handed alpha
Helix 47
AF2
A
1235 1240Right-handed alpha
Helix 48
AF3
A
1254 1262Right-handed alpha
Helix 49
AF4
A
1280 1284Right-handed 310
Helix 50
AF5
E
44 66Right-handed alpha
Helix 51
AF6
E
78 81Right-handed 310
Helix 52
AF7
E
150 155Right-handed alpha
Helix 53
AF8
E
158 163Right-handed alpha
Helix 54
AF9
E
173 179Right-handed 310
Helix 55
AG1
E
190 195Right-handed alpha
Helix 56
AG2
E
226 231Right-handed alpha
Helix 57
AG3
E
262 267Right-handed alpha
Helix 58
AG4
E
268 273Right-handed alpha
Helix 59
AG5
E
330 357Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 6PSY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 298first strand
Strand 2
A
283 287anti-parallel
Strand 3
A
307 310anti-parallel
Strand 4
A
413 419anti-parallel
Strand 5
A
319 325anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
406 408anti-parallel
Strand 3
A
333 335anti-parallel
Strand 4
A
345 347anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 371first strand
Strand 2
A
384 387anti-parallel
Strand 3
A
392 395anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
859 861first strand
Strand 2
A
894 897parallel
Strand 3
A
923 926parallel
Strand 4
A
830 834parallel
Strand 5
A
556 559parallel
Strand 6
A
949 953parallel
Strand 7
A
967 971parallel
Strand 8
A
985 987parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
571 577first strand
Strand 2
A
802 810anti-parallel
Strand 3
A
755 763anti-parallel
Strand 4
A
716 722anti-parallel
Strand 5
A
704 710anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
637 640first strand
Strand 2
A
646 649anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
668 672first strand
Strand 2
A
677 681anti-parallel
Strand 3
A
689 691anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
97 99first strand
Strand 2
E
73 76anti-parallel
Strand 3
E
315 320anti-parallel
Strand 4
E
137 143anti-parallel
Strand 5
E
281 288anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
90 91first strand
Strand 2
E
110 111anti-parallel
Strand 3
E
122 128anti-parallel
Strand 4
E
297 303anti-parallel
Strand 5
E
201 202anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
90 91first strand
Strand 2
E
110 111anti-parallel
Strand 3
E
122 128anti-parallel
Strand 4
E
297 303anti-parallel
Strand 5
E
205 209anti-parallel
Strand 6
E
215 216anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
181 182first strand
Strand 2
E
185 187anti-parallel
Strand 3
E
241 242parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il