Analysis of interatomic Contacts of Structural Units in PDB entry:
6PT0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PT0 entry

There are 5 chains in PDB entry 6PT0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	MET 22	LYS 319
A	GLY 2	PHE 354
B	GLN 1	ASN 340
C	THR 6	PHE 66
E	VAL 2	LEU 247

There are 32 helices in PDB entry 6PT0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	29	61	Right-handed alpha
Helix 2	AA2	R	61	67	Right-handed alpha
Helix 3	AA3	R	67	96	Right-handed alpha
Helix 4	AA4	R	102	137	Right-handed alpha
Helix 5	AA5	R	140	145	Right-handed alpha
Helix 6	AA6	R	146	171	Right-handed alpha
Helix 7	AA7	R	187	227	Right-handed alpha
Helix 8	AA8	R	229	234	Right-handed alpha
Helix 9	AA9	R	238	271	Right-handed alpha
Helix 10	AB1	R	274	302	Right-handed alpha
Helix 11	AB2	R	303	319	Right-handed alpha
Helix 12	AB3	A	6	32	Right-handed alpha
Helix 13	AB4	A	46	54	Right-handed alpha
Helix 14	AB5	A	63	88	Right-handed alpha
Helix 15	AB6	A	101	116	Right-handed alpha
Helix 16	AB7	A	120	132	Right-handed alpha
Helix 17	AB8	A	133	144	Right-handed alpha
Helix 18	AB9	A	149	151	Right-handed 310
Helix 19	AC1	A	152	158	Right-handed alpha
Helix 20	AC2	A	158	164	Right-handed alpha
Helix 21	AC3	A	170	179	Right-handed alpha
Helix 22	AC4	A	212	217	Right-handed 310
Helix 23	AC5	A	241	255	Right-handed alpha
Helix 24	AC6	A	270	281	Right-handed alpha
Helix 25	AC7	A	295	309	Right-handed alpha
Helix 26	AC8	A	327	352	Right-handed alpha
Helix 27	AC9	B	2	25	Right-handed alpha
Helix 28	AD1	B	29	34	Right-handed alpha
Helix 29	AD2	C	7	24	Right-handed alpha
Helix 30	AD3	C	29	44	Right-handed alpha
Helix 31	AD4	E	28	32	Right-handed 310
Helix 32	AD5	E	53	56	Right-handed 310

There are 12 sheets in PDB entry 6PT0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	220	225	parallel
Strand 5	A	265	268	parallel
Strand 6	A	320	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	114	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	135	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	151	first strand
Strand 2	B	156	160	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	176	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	192	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	218	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	7	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	12	first strand
Strand 2	E	115	119	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	51	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	148	first strand
Strand 2	E	243	246	parallel
Strand 3	E	225	231	anti-parallel
Strand 4	E	174	179	anti-parallel
Strand 5	E	185	190	anti-parallel
Strand 6	E	194	195	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	160	first strand
Strand 2	E	211	216	anti-parallel
Strand 3	E	203	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PT0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PT0