Analysis of interatomic Contacts of Structural Units in PDB entry:
6PT5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PT5 entry

There are 4 chains in PDB entry 6PT5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 21	PRO 265
B	ASN 19	PRO 265
C	GLN 23	PRO 265
D	PHE 22	PRO 265

There are 50 helices in PDB entry 6PT5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	38	Right-handed alpha
Helix 2	AA2	A	58	64	Right-handed alpha
Helix 3	AA3	A	68	71	Right-handed 310
Helix 4	AA4	A	72	83	Right-handed alpha
Helix 5	AA5	A	102	107	Right-handed 310
Helix 6	AA6	A	110	117	Right-handed alpha
Helix 7	AA7	A	119	131	Right-handed alpha
Helix 8	AA8	A	131	143	Right-handed alpha
Helix 9	AA9	A	155	160	Right-handed alpha
Helix 10	AB1	A	166	178	Right-handed alpha
Helix 11	AB2	A	184	195	Right-handed alpha
Helix 12	AB3	A	243	247	Right-handed 310
Helix 13	AB4	A	248	261	Right-handed alpha
Helix 14	AB5	B	31	38	Right-handed alpha
Helix 15	AB6	B	58	63	Right-handed alpha
Helix 16	AB7	B	68	71	Right-handed 310
Helix 17	AB8	B	72	83	Right-handed alpha
Helix 18	AB9	B	102	106	Right-handed 310
Helix 19	AC1	B	110	117	Right-handed alpha
Helix 20	AC2	B	119	143	Right-handed alpha
Helix 21	AC3	B	155	160	Right-handed alpha
Helix 22	AC4	B	166	178	Right-handed alpha
Helix 23	AC5	B	184	195	Right-handed alpha
Helix 24	AC6	B	243	247	Right-handed 310
Helix 25	AC7	B	248	261	Right-handed alpha
Helix 26	AC8	C	31	37	Right-handed alpha
Helix 27	AC9	C	58	63	Right-handed alpha
Helix 28	AD1	C	68	71	Right-handed 310
Helix 29	AD2	C	72	83	Right-handed alpha
Helix 30	AD3	C	102	106	Right-handed 310
Helix 31	AD4	C	110	117	Right-handed alpha
Helix 32	AD5	C	119	131	Right-handed alpha
Helix 33	AD6	C	131	142	Right-handed alpha
Helix 34	AD7	C	155	160	Right-handed alpha
Helix 35	AD8	C	166	178	Right-handed alpha
Helix 36	AD9	C	184	195	Right-handed alpha
Helix 37	AE1	C	243	247	Right-handed 310
Helix 38	AE2	C	248	261	Right-handed alpha
Helix 39	AE3	D	31	37	Right-handed alpha
Helix 40	AE4	D	58	63	Right-handed alpha
Helix 41	AE5	D	68	71	Right-handed 310
Helix 42	AE6	D	72	83	Right-handed alpha
Helix 43	AE7	D	102	106	Right-handed 310
Helix 44	AE8	D	110	117	Right-handed alpha
Helix 45	AE9	D	119	131	Right-handed alpha
Helix 46	AF1	D	131	142	Right-handed alpha
Helix 47	AF2	D	165	178	Right-handed alpha
Helix 48	AF3	D	184	195	Right-handed alpha
Helix 49	AF4	D	243	247	Right-handed 310
Helix 50	AF5	D	248	261	Right-handed alpha

There are 7 sheets in PDB entry 6PT5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	27	first strand
Strand 2	A	53	56	parallel
Strand 3	A	42	48	anti-parallel
Strand 4	A	232	240	anti-parallel
Strand 5	A	219	227	anti-parallel
Strand 6	A	204	212	anti-parallel
Strand 7	A	196	199	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	65	66	first strand
Strand 2	A	164	165	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	53	56	parallel
Strand 3	B	42	48	anti-parallel
Strand 4	B	232	240	anti-parallel
Strand 5	B	219	227	anti-parallel
Strand 6	B	204	212	anti-parallel
Strand 7	B	196	199	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	65	66	first strand
Strand 2	B	164	165	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	27	first strand
Strand 2	C	53	56	parallel
Strand 3	C	42	48	anti-parallel
Strand 4	C	232	240	anti-parallel
Strand 5	C	219	227	anti-parallel
Strand 6	C	204	212	anti-parallel
Strand 7	C	196	199	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	66	first strand
Strand 2	C	164	165	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	53	56	parallel
Strand 3	D	42	48	anti-parallel
Strand 4	D	232	240	anti-parallel
Strand 5	D	219	227	anti-parallel
Strand 6	D	204	212	anti-parallel
Strand 7	D	196	199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PT5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PT5