Analysis of interatomic Contacts of Structural Units in PDB entry:
6PT8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PT8 entry

There are 2 chains in PDB entry 6PT8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 350
B
 MET 1LYS 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 6PT8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 16Right-handed alpha
Helix 2
AA2
A
29 34Right-handed 310
Helix 3
AA3
A
44 46Right-handed 310
Helix 4
AA4
A
47 59Right-handed alpha
Helix 5
AA5
A
77 89Right-handed alpha
Helix 6
AA6
A
117 121Right-handed 310
Helix 7
AA7
A
126 140Right-handed alpha
Helix 8
AA8
A
154 166Right-handed alpha
Helix 9
AA9
A
182 197Right-handed alpha
Helix 10
AB1
A
204 213Right-handed alpha
Helix 11
AB2
A
215 230Right-handed alpha
Helix 12
AB3
A
239 258Right-handed alpha
Helix 13
AB4
A
268 272Right-handed alpha
Helix 14
AB5
A
277 286Right-handed alpha
Helix 15
AB6
A
296 300Right-handed 310
Helix 16
AB7
A
302 307Right-handed alpha
Helix 17
AB8
A
308 311Right-handed 310
Helix 18
AB9
A
318 329Right-handed alpha
Helix 19
AC1
A
333 349Right-handed alpha
Helix 20
AC2
B
10 16Right-handed alpha
Helix 21
AC3
B
29 34Right-handed 310
Helix 22
AC4
B
44 46Right-handed 310
Helix 23
AC5
B
47 59Right-handed alpha
Helix 24
AC6
B
77 89Right-handed alpha
Helix 25
AC7
B
117 121Right-handed 310
Helix 26
AC8
B
126 140Right-handed alpha
Helix 27
AC9
B
154 166Right-handed alpha
Helix 28
AD1
B
182 197Right-handed alpha
Helix 29
AD2
B
204 213Right-handed alpha
Helix 30
AD3
B
215 230Right-handed alpha
Helix 31
AD4
B
239 253Right-handed alpha
Helix 32
AD5
B
253 258Right-handed alpha
Helix 33
AD6
B
268 272Right-handed alpha
Helix 34
AD7
B
277 286Right-handed alpha
Helix 35
AD8
B
296 300Right-handed 310
Helix 36
AD9
B
302 307Right-handed alpha
Helix 37
AE1
B
308 311Right-handed 310
Helix 38
AE2
B
318 329Right-handed alpha
Helix 39
AE3
B
333 349Right-handed alpha
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There are 2 sheets in PDB entry 6PT8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
290 293anti-parallel
Strand 3
A
262 267parallel
Strand 4
A
234 237parallel
Strand 5
A
145 151parallel
Strand 6
A
20 26parallel
Strand 7
A
91 92parallel
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There are 16 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
290 293anti-parallel
Strand 3
A
262 267parallel
Strand 4
A
234 237parallel
Strand 5
A
145 151parallel
Strand 6
A
20 26parallel
Strand 7
A
95 97parallel
Strand 8
A
107 111parallel
Strand 9
B
107 111anti-parallel
Strand 10
B
95 97parallel
Strand 11
B
20 26parallel
Strand 12
B
145 151parallel
Strand 13
B
234 237parallel
Strand 14
B
262 267parallel
Strand 15
B
290 293parallel
Strand 16
B
3 6anti-parallel
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