Analysis of interatomic Contacts of Structural Units in PDB entry:
6PT9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PT9 entry

There are 2 chains in PDB entry 6PT9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 36LEU 507
B
 LYS 35LEU 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 6PT9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 56Right-handed 310
Helix 2
AA2
A
61 71Right-handed alpha
Helix 3
AA3
A
83 94Right-handed alpha
Helix 4
AA4
A
96 101Right-handed alpha
Helix 5
AA5
A
121 130Right-handed alpha
Helix 6
AA6
A
145 150Right-handed alpha
Helix 7
AA7
A
171 183Right-handed alpha
Helix 8
AA8
A
187 191Right-handed 310
Helix 9
AA9
A
202 205Right-handed 310
Helix 10
AB1
A
206 224Right-handed alpha
Helix 11
AB2
A
253 257Right-handed 310
Helix 12
AB3
A
271 275Right-handed 310
Helix 13
AB4
A
279 283Right-handed 310
Helix 14
AB5
A
288 320Right-handed alpha
Helix 15
AB6
A
322 326Right-handed 310
Helix 16
AB7
A
340 342Right-handed 310
Helix 17
AB8
A
351 356Right-handed alpha
Helix 18
AB9
A
379 389Right-handed alpha
Helix 19
AC1
A
401 408Right-handed alpha
Helix 20
AC2
A
409 413Right-handed 310
Helix 21
AC3
A
470 472Right-handed 310
Helix 22
AC4
A
473 491Right-handed alpha
Helix 23
AC5
A
495 503Right-handed alpha
Helix 24
AC6
A
504 507Right-handed 310
Helix 25
AC7
B
52 56Right-handed 310
Helix 26
AC8
B
61 71Right-handed alpha
Helix 27
AC9
B
83 94Right-handed alpha
Helix 28
AD1
B
96 101Right-handed alpha
Helix 29
AD2
B
121 130Right-handed alpha
Helix 30
AD3
B
145 150Right-handed alpha
Helix 31
AD4
B
171 183Right-handed alpha
Helix 32
AD5
B
187 191Right-handed 310
Helix 33
AD6
B
202 205Right-handed 310
Helix 34
AD7
B
206 223Right-handed alpha
Helix 35
AD8
B
247 252Right-handed alpha
Helix 36
AD9
B
253 257Right-handed 310
Helix 37
AE1
B
271 275Right-handed 310
Helix 38
AE2
B
279 283Right-handed 310
Helix 39
AE3
B
288 320Right-handed alpha
Helix 40
AE4
B
322 326Right-handed 310
Helix 41
AE5
B
340 342Right-handed 310
Helix 42
AE6
B
351 356Right-handed alpha
Helix 43
AE7
B
379 389Right-handed alpha
Helix 44
AE8
B
401 408Right-handed alpha
Helix 45
AE9
B
409 413Right-handed 310
Helix 46
AF1
B
470 472Right-handed 310
Helix 47
AF2
B
473 491Right-handed alpha
Helix 48
AF3
B
495 503Right-handed alpha
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There are 10 sheets in PDB entry 6PT9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
153 156first strand
Strand 2
A
133 138parallel
Strand 3
A
229 235parallel
Strand 4
A
39 44parallel
Strand 5
A
327 332parallel
Strand 6
A
359 362anti-parallel
Strand 7
A
72 74anti-parallel
Strand 8
A
369 371parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
375 376parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
196 199first strand
Strand 2
A
242 245parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 338first strand
Strand 2
A
344 345anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
419 426first strand
Strand 2
A
429 437anti-parallel
Strand 3
A
441 445anti-parallel
Strand 4
A
453 456anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
153 156first strand
Strand 2
B
133 138parallel
Strand 3
B
229 235parallel
Strand 4
B
39 44parallel
Strand 5
B
327 332parallel
Strand 6
B
359 362anti-parallel
Strand 7
B
72 74anti-parallel
Strand 8
B
369 371parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 78first strand
Strand 2
B
375 376parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 199first strand
Strand 2
B
242 245parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 338first strand
Strand 2
B
344 345anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
419 426first strand
Strand 2
B
429 437anti-parallel
Strand 3
B
441 445anti-parallel
Strand 4
B
453 456anti-parallel
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