Analysis of interatomic Contacts of Structural Units in PDB entry:
6PTF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PTF entry

There is 1 chain in PDB entry 6PTF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6PTF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 16Right-handed alpha
Helix 2
AA2
A
29 34Right-handed 310
Helix 3
AA3
A
47 59Right-handed alpha
Helix 4
AA4
A
76 89Right-handed alpha
Helix 5
AA5
A
126 140Right-handed alpha
Helix 6
AA6
A
154 166Right-handed alpha
Helix 7
AA7
A
183 197Right-handed alpha
Helix 8
AA8
A
204 213Right-handed alpha
Helix 9
AA9
A
215 230Right-handed alpha
Helix 10
AB1
A
239 253Right-handed alpha
Helix 11
AB2
A
253 258Right-handed alpha
Helix 12
AB3
A
268 272Right-handed alpha
Helix 13
AB4
A
277 286Right-handed alpha
Helix 14
AB5
A
302 307Right-handed alpha
Helix 15
AB6
A
318 329Right-handed alpha
Helix 16
AB7
A
333 348Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6PTF.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 6first strand
Strand 2
A
290 293anti-parallel
Strand 3
A
262 267parallel
Strand 4
A
234 237parallel
Strand 5
A
145 151parallel
Strand 6
A
20 26parallel
Strand 7
A
95 97parallel
Strand 8
A
108 111parallel
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