Analysis of interatomic Contacts of Structural Units in PDB entry:
6PTH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PTH entry

There are 5 chains in PDB entry 6PTH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -1LEU 367
G
 LEU 5LEU 5
G
 LEU 7LEU 7
G
 PRO 9PRO 9
G
 GLY 11GLY 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6PTH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 20Right-handed alpha
Helix 2
AA2
A
27 30Right-handed 310
Helix 3
AA3
A
72 82Right-handed alpha
Helix 4
AA4
A
114 116Right-handed 310
Helix 5
AA5
A
132 141Right-handed alpha
Helix 6
AA6
A
142 146Right-handed 310
Helix 7
AA7
A
153 155Right-handed 310
Helix 8
AA8
A
198 208Right-handed alpha
Helix 9
AA9
A
244 249Right-handed 310
Helix 10
AB1
A
261 272Right-handed alpha
Helix 11
AB2
A
273 275Right-handed 310
Helix 12
AB3
A
322 332Right-handed alpha
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There are 4 sheets in PDB entry 6PTH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
87 93anti-parallel
Strand 3
A
96 101anti-parallel
Strand 4
A
104 109anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
66 71anti-parallel
Strand 3
A
32 38anti-parallel
Strand 4
A
41 47anti-parallel
Strand 5
A
51 58anti-parallel
Strand 6
A
231 236anti-parallel
Strand 7
A
223 227anti-parallel
Strand 8
A
214 219anti-parallel
Strand 9
A
126 131anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 197first strand
Strand 2
A
157 163anti-parallel
Strand 3
A
166 172anti-parallel
Strand 4
A
176 183anti-parallel
Strand 5
A
358 362anti-parallel
Strand 6
A
348 352anti-parallel
Strand 7
A
336 341anti-parallel
Strand 8
A
255 260anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 308first strand
Strand 2
A
290 296anti-parallel
Strand 3
A
281 287anti-parallel
Strand 4
A
316 321anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il