Analysis of interatomic Contacts of Structural Units in PDB entry:
6PTJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PTJ entry

There are 14 chains in PDB entry 6PTJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 208
B	LEU 3	LEU 200
C	TYR 3	LYS 193
D	ILE 3	LEU 293
c	ILE 5	LEU 650
2	PRO 201	GLU 460
3	PRO 17	ALA 331
4	LEU 177	VAL 469
5	ASN 24	THR 339
6	VAL 103	GLY 463
7	MET 1	LYS 386
E	PHE 474	LYS 927
F	PHE 474	LYS 927
G	PHE 474	GLU 923

There are125 helices in PDB entry 6PTJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	21	Right-handed alpha
Helix 2	AA2	A	34	52	Right-handed alpha
Helix 3	AA3	A	52	58	Right-handed alpha
Helix 4	AA4	A	68	75	Right-handed alpha
Helix 5	AA5	A	76	104	Right-handed alpha
Helix 6	AA6	A	126	142	Right-handed alpha
Helix 7	AA7	B	19	23	Right-handed 310
Helix 8	AA8	B	77	82	Right-handed alpha
Helix 9	AA9	B	99	107	Right-handed alpha
Helix 10	AB1	B	120	123	Right-handed 310
Helix 11	AB2	B	124	130	Right-handed alpha
Helix 12	AB3	B	141	159	Right-handed alpha
Helix 13	AB4	B	181	197	Right-handed alpha
Helix 14	AB5	C	5	10	Right-handed alpha
Helix 15	AB6	C	11	13	Right-handed 310
Helix 16	AB7	C	81	91	Right-handed alpha
Helix 17	AB8	C	104	109	Right-handed alpha
Helix 18	AB9	C	109	114	Right-handed alpha
Helix 19	AC1	C	123	133	Right-handed alpha
Helix 20	AC2	C	173	189	Right-handed alpha
Helix 21	AC3	D	5	11	Right-handed alpha
Helix 22	AC4	D	55	73	Right-handed alpha
Helix 23	AC5	D	82	86	Right-handed 310
Helix 24	AC6	D	87	105	Right-handed alpha
Helix 25	AC7	D	124	127	Right-handed 310
Helix 26	AC8	D	128	142	Right-handed alpha
Helix 27	AC9	D	143	148	Right-handed alpha
Helix 28	AD1	D	156	164	Right-handed alpha
Helix 29	AD2	D	178	195	Right-handed alpha
Helix 30	AD3	D	198	202	Right-handed 310
Helix 31	AD4	c	8	17	Right-handed alpha
Helix 32	AD5	c	36	48	Right-handed alpha
Helix 33	AD6	c	65	72	Right-handed alpha
Helix 34	AD7	c	91	97	Right-handed alpha
Helix 35	AD8	c	130	135	Right-handed alpha
Helix 36	AD9	c	145	150	Right-handed alpha
Helix 37	AE1	c	153	161	Right-handed alpha
Helix 38	AE2	c	219	237	Right-handed alpha
Helix 39	AE3	c	250	263	Right-handed alpha
Helix 40	AE4	c	267	275	Right-handed alpha
Helix 41	AE5	c	278	283	Right-handed alpha
Helix 42	AE6	c	297	302	Right-handed alpha
Helix 43	AE7	c	334	340	Right-handed alpha
Helix 44	AE8	c	344	349	Right-handed alpha
Helix 45	AE9	c	355	367	Right-handed alpha
Helix 46	AF1	c	371	375	Right-handed 310
Helix 47	AF2	c	376	380	Right-handed 310
Helix 48	AF3	c	381	386	Right-handed alpha
Helix 49	AF4	c	387	395	Right-handed alpha
Helix 50	AF5	c	421	430	Right-handed alpha
Helix 51	AF6	c	463	482	Right-handed alpha
Helix 52	AF7	c	492	497	Right-handed alpha
Helix 53	AF8	c	509	517	Right-handed alpha
Helix 54	AF9	c	537	540	Right-handed 310
Helix 55	AG1	c	541	557	Right-handed alpha
Helix 56	AG2	c	606	614	Right-handed alpha
Helix 57	AG3	c	636	646	Right-handed alpha
Helix 58	AG4	2	203	212	Right-handed alpha
Helix 59	AG5	2	212	217	Right-handed alpha
Helix 60	AG6	2	246	251	Right-handed alpha
Helix 61	AG7	2	253	262	Right-handed alpha
Helix 62	AG8	2	263	280	Right-handed alpha
Helix 63	AG9	2	310	314	Right-handed 310
Helix 64	AH1	3	18	27	Right-handed alpha
Helix 65	AH2	3	36	52	Right-handed alpha
Helix 66	AH3	3	52	57	Right-handed alpha
Helix 67	AH4	3	102	107	Right-handed alpha
Helix 68	AH5	3	107	115	Right-handed alpha
Helix 69	AH6	3	121	136	Right-handed alpha
Helix 70	AH7	4	192	200	Right-handed alpha
Helix 71	AH8	4	204	208	Right-handed 310
Helix 72	AH9	4	224	237	Right-handed alpha
Helix 73	AI1	4	254	264	Right-handed alpha
Helix 74	AI2	4	266	279	Right-handed alpha
Helix 75	AI3	4	280	285	Right-handed alpha
Helix 76	AI4	4	420	424	Right-handed 310
Helix 77	AI5	5	28	38	Right-handed alpha
Helix 78	AI6	5	44	48	Right-handed 310
Helix 79	AI7	5	51	56	Right-handed alpha
Helix 80	AI8	5	65	72	Right-handed alpha
Helix 81	AI9	5	72	82	Right-handed alpha
Helix 82	AJ1	5	86	95	Right-handed alpha
Helix 83	AJ2	6	104	120	Right-handed alpha
Helix 84	AJ3	6	134	147	Right-handed alpha
Helix 85	AJ4	6	155	160	Right-handed alpha
Helix 86	AJ5	6	166	173	Right-handed alpha
Helix 87	AJ6	6	177	190	Right-handed alpha
Helix 88	AJ7	6	280	284	Right-handed 310
Helix 89	AJ8	6	364	368	Right-handed 310
Helix 90	AJ9	7	15	17	Right-handed 310
Helix 91	AK1	7	18	23	Right-handed alpha
Helix 92	AK2	7	61	72	Right-handed alpha
Helix 93	AK3	7	82	92	Right-handed alpha
Helix 94	AK4	7	102	110	Right-handed alpha
Helix 95	AK5	7	111	116	Right-handed alpha
Helix 96	AK6	7	140	154	Right-handed alpha
Helix 97	AK7	7	210	215	Right-handed alpha
Helix 98	AK8	7	231	235	Right-handed 310
Helix 99	AK9	E	673	680	Right-handed alpha
Helix 100	AL1	E	726	732	Right-handed alpha
Helix 101	AL2	E	786	790	Right-handed 310
Helix 102	AL3	E	818	844	Right-handed alpha
Helix 103	AL4	E	850	876	Right-handed alpha
Helix 104	AL5	E	879	885	Right-handed alpha
Helix 105	AL6	E	886	888	Right-handed 310
Helix 106	AL7	E	894	906	Right-handed alpha
Helix 107	AL8	E	907	927	Right-handed alpha
Helix 108	AL9	F	666	670	Right-handed 310
Helix 109	AM1	F	673	680	Right-handed alpha
Helix 110	AM2	F	723	732	Right-handed alpha
Helix 111	AM3	F	782	788	Right-handed alpha
Helix 112	AM4	F	818	842	Right-handed alpha
Helix 113	AM5	F	850	876	Right-handed alpha
Helix 114	AM6	F	878	887	Right-handed alpha
Helix 115	AM7	F	891	903	Right-handed alpha
Helix 116	AM8	F	909	926	Right-handed alpha
Helix 117	AM9	G	673	678	Right-handed alpha
Helix 118	AN1	G	724	733	Right-handed alpha
Helix 119	AN2	G	782	790	Right-handed alpha
Helix 120	AN3	G	818	844	Right-handed alpha
Helix 121	AN4	G	850	875	Right-handed alpha
Helix 122	AN5	G	878	882	Right-handed 310
Helix 123	AN6	G	884	889	Right-handed alpha
Helix 124	AN7	G	891	905	Right-handed alpha
Helix 125	AN8	G	907	922	Right-handed alpha

There are 48 sheets in PDB entry 6PTJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	c	56	61	anti-parallel
Strand 3	c	27	32	parallel
Strand 4	c	82	84	parallel
Strand 5	c	120	123	parallel
Strand 6	c	140	141	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	27	first strand
Strand 2	B	69	71	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	19	first strand
Strand 2	C	43	47	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	24	25	first strand
Strand 2	C	37	38	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	278	first strand
Strand 2	D	227	232	anti-parallel
Strand 3	D	291	292	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	317	323	first strand
Strand 2	c	406	412	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	519	520	first strand
Strand 2	c	526	528	anti-parallel
Strand 3	c	567	570	parallel
Strand 4	c	581	583	anti-parallel
Strand 5	c	629	632	anti-parallel
Strand 6	c	620	621	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	241	244	first strand
Strand 2	2	294	297	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	2	429	431	first strand
Strand 2	2	450	452	anti-parallel
Strand 3	2	405	410	parallel
Strand 4	2	386	391	anti-parallel
Strand 5	2	320	327	anti-parallel
Strand 6	2	423	426	anti-parallel
Strand 7	2	456	457	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	193	198	first strand
Strand 2	3	249	259	anti-parallel
Strand 3	3	273	279	anti-parallel
Strand 4	3	321	322	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	193	198	first strand
Strand 2	3	249	259	anti-parallel
Strand 3	3	179	186	anti-parallel
Strand 4	3	291	297	anti-parallel
Strand 5	3	327	328	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	201	202	first strand
Strand 2	3	242	243	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	339	342	first strand
Strand 2	4	391	401	anti-parallel
Strand 3	4	414	419	anti-parallel
Strand 4	4	453	461	parallel
Strand 5	4	440	445	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	339	342	first strand
Strand 2	4	391	401	anti-parallel
Strand 3	4	326	335	anti-parallel
Strand 4	4	433	437	anti-parallel
Strand 5	4	463	467	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	4	344	345	first strand
Strand 2	4	358	359	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	60	64	first strand
Strand 2	5	136	140	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	273	274	first strand
Strand 2	5	258	259	anti-parallel
Strand 3	5	159	166	anti-parallel
Strand 4	5	291	301	anti-parallel
Strand 5	5	325	335	anti-parallel
Strand 6	5	276	277	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	5	190	193	first strand
Strand 2	5	175	183	anti-parallel
Strand 3	5	241	251	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	150	154	first strand
Strand 2	6	264	268	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	301	303	first strand
Strand 2	6	354	362	anti-parallel
Strand 3	6	292	295	anti-parallel
Strand 4	6	394	395	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	6	301	303	first strand
Strand 2	6	354	362	anti-parallel
Strand 3	6	376	381	anti-parallel
Strand 4	6	449	456	parallel
Strand 5	6	401	406	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	78	79	first strand
Strand 2	7	202	203	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	376	377	first strand
Strand 2	7	331	336	parallel
Strand 3	7	310	316	anti-parallel
Strand 4	7	238	246	anti-parallel
Strand 5	7	349	354	anti-parallel
Strand 6	7	380	382	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	254	255	first strand
Strand 2	7	307	308	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	7	259	261	first strand
Strand 2	7	299	301	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	491	496	first strand
Strand 2	E	500	505	anti-parallel
Strand 3	E	511	517	anti-parallel
Strand 4	E	526	530	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	536	539	first strand
Strand 2	E	544	547	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	553	556	first strand
Strand 2	E	566	569	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	578	582	first strand
Strand 2	E	587	592	anti-parallel
Strand 3	E	597	601	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	615	620	first strand
Strand 2	E	624	629	anti-parallel
Strand 3	E	637	642	anti-parallel
Strand 4	E	652	656	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	686	689	first strand
Strand 2	E	695	698	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	707	708	first strand
Strand 2	E	717	718	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	744	747	first strand
Strand 2	E	751	754	anti-parallel
Strand 3	E	772	775	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	491	496	first strand
Strand 2	F	501	506	anti-parallel
Strand 3	F	511	515	anti-parallel
Strand 4	F	526	530	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	536	539	first strand
Strand 2	F	544	548	anti-parallel
Strand 3	F	553	556	anti-parallel
Strand 4	F	567	569	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	578	583	first strand
Strand 2	F	587	592	anti-parallel
Strand 3	F	596	601	anti-parallel
Strand 4	F	609	611	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	615	620	first strand
Strand 2	F	624	629	anti-parallel
Strand 3	F	637	643	anti-parallel
Strand 4	F	648	656	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	696	698	first strand
Strand 2	F	704	708	anti-parallel
Strand 3	F	717	718	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	744	747	first strand
Strand 2	F	752	754	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	491	496	first strand
Strand 2	G	500	506	anti-parallel
Strand 3	G	511	517	anti-parallel
Strand 4	G	527	530	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	536	539	first strand
Strand 2	G	543	547	anti-parallel
Strand 3	G	554	558	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	578	583	first strand
Strand 2	G	588	592	anti-parallel
Strand 3	G	597	600	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	615	620	first strand
Strand 2	G	624	629	anti-parallel
Strand 3	G	641	642	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	615	620	first strand
Strand 2	G	624	629	anti-parallel
Strand 3	G	637	638	anti-parallel
Strand 4	G	655	656	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	686	689	first strand
Strand 2	G	695	698	anti-parallel
Strand 3	G	703	708	anti-parallel
Strand 4	G	717	718	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	686	689	first strand
Strand 2	G	695	698	anti-parallel
Strand 3	G	703	708	anti-parallel
Strand 4	G	722	723	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	740	741	first strand
Strand 2	G	757	758	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	744	747	first strand
Strand 2	G	751	754	anti-parallel
Strand 3	G	772	775	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PTJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PTJ