Analysis of interatomic Contacts of Structural Units in PDB entry:
6PTK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PTK entry

There are 4 chains in PDB entry 6PTK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 36	LEU 507
B	LYS 36	LEU 507
C	LYS 36	LEU 507
D	LYS 36	LEU 507

There are100 helices in PDB entry 6PTK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	56	Right-handed 310
Helix 2	AA2	A	61	71	Right-handed alpha
Helix 3	AA3	A	83	94	Right-handed alpha
Helix 4	AA4	A	96	101	Right-handed alpha
Helix 5	AA5	A	121	130	Right-handed alpha
Helix 6	AA6	A	145	150	Right-handed alpha
Helix 7	AA7	A	171	183	Right-handed alpha
Helix 8	AA8	A	187	191	Right-handed 310
Helix 9	AA9	A	202	205	Right-handed 310
Helix 10	AB1	A	206	224	Right-handed alpha
Helix 11	AB2	A	247	251	Right-handed 310
Helix 12	AB3	A	253	257	Right-handed 310
Helix 13	AB4	A	271	275	Right-handed 310
Helix 14	AB5	A	279	283	Right-handed 310
Helix 15	AB6	A	288	320	Right-handed alpha
Helix 16	AB7	A	322	326	Right-handed 310
Helix 17	AB8	A	340	342	Right-handed 310
Helix 18	AB9	A	351	356	Right-handed alpha
Helix 19	AC1	A	379	389	Right-handed alpha
Helix 20	AC2	A	401	408	Right-handed alpha
Helix 21	AC3	A	409	413	Right-handed 310
Helix 22	AC4	A	470	472	Right-handed 310
Helix 23	AC5	A	473	491	Right-handed alpha
Helix 24	AC6	A	495	503	Right-handed alpha
Helix 25	AC7	A	504	507	Right-handed 310
Helix 26	AC8	B	52	56	Right-handed 310
Helix 27	AC9	B	61	71	Right-handed alpha
Helix 28	AD1	B	83	94	Right-handed alpha
Helix 29	AD2	B	96	101	Right-handed alpha
Helix 30	AD3	B	121	130	Right-handed alpha
Helix 31	AD4	B	145	150	Right-handed alpha
Helix 32	AD5	B	171	183	Right-handed alpha
Helix 33	AD6	B	187	191	Right-handed 310
Helix 34	AD7	B	202	205	Right-handed 310
Helix 35	AD8	B	206	224	Right-handed alpha
Helix 36	AD9	B	247	251	Right-handed 310
Helix 37	AE1	B	253	257	Right-handed 310
Helix 38	AE2	B	271	275	Right-handed 310
Helix 39	AE3	B	279	283	Right-handed 310
Helix 40	AE4	B	288	320	Right-handed alpha
Helix 41	AE5	B	322	326	Right-handed 310
Helix 42	AE6	B	340	342	Right-handed 310
Helix 43	AE7	B	351	356	Right-handed alpha
Helix 44	AE8	B	379	389	Right-handed alpha
Helix 45	AE9	B	401	408	Right-handed alpha
Helix 46	AF1	B	409	413	Right-handed 310
Helix 47	AF2	B	470	472	Right-handed 310
Helix 48	AF3	B	473	491	Right-handed alpha
Helix 49	AF4	B	495	503	Right-handed alpha
Helix 50	AF5	B	504	507	Right-handed 310
Helix 51	AF6	C	52	56	Right-handed 310
Helix 52	AF7	C	61	71	Right-handed alpha
Helix 53	AF8	C	83	94	Right-handed alpha
Helix 54	AF9	C	96	101	Right-handed alpha
Helix 55	AG1	C	121	130	Right-handed alpha
Helix 56	AG2	C	145	150	Right-handed alpha
Helix 57	AG3	C	171	183	Right-handed alpha
Helix 58	AG4	C	187	191	Right-handed 310
Helix 59	AG5	C	202	205	Right-handed 310
Helix 60	AG6	C	206	224	Right-handed alpha
Helix 61	AG7	C	247	251	Right-handed 310
Helix 62	AG8	C	253	257	Right-handed 310
Helix 63	AG9	C	271	275	Right-handed 310
Helix 64	AH1	C	279	283	Right-handed 310
Helix 65	AH2	C	288	320	Right-handed alpha
Helix 66	AH3	C	322	326	Right-handed 310
Helix 67	AH4	C	340	342	Right-handed 310
Helix 68	AH5	C	351	356	Right-handed alpha
Helix 69	AH6	C	379	389	Right-handed alpha
Helix 70	AH7	C	401	408	Right-handed alpha
Helix 71	AH8	C	409	413	Right-handed 310
Helix 72	AH9	C	470	472	Right-handed 310
Helix 73	AI1	C	473	491	Right-handed alpha
Helix 74	AI2	C	495	503	Right-handed alpha
Helix 75	AI3	C	504	507	Right-handed 310
Helix 76	AI4	D	52	56	Right-handed 310
Helix 77	AI5	D	61	71	Right-handed alpha
Helix 78	AI6	D	83	94	Right-handed alpha
Helix 79	AI7	D	96	101	Right-handed alpha
Helix 80	AI8	D	121	130	Right-handed alpha
Helix 81	AI9	D	145	150	Right-handed alpha
Helix 82	AJ1	D	171	183	Right-handed alpha
Helix 83	AJ2	D	187	191	Right-handed 310
Helix 84	AJ3	D	202	205	Right-handed 310
Helix 85	AJ4	D	206	223	Right-handed alpha
Helix 86	AJ5	D	247	251	Right-handed 310
Helix 87	AJ6	D	253	257	Right-handed 310
Helix 88	AJ7	D	271	275	Right-handed 310
Helix 89	AJ8	D	279	283	Right-handed 310
Helix 90	AJ9	D	288	320	Right-handed alpha
Helix 91	AK1	D	322	326	Right-handed 310
Helix 92	AK2	D	340	342	Right-handed 310
Helix 93	AK3	D	351	356	Right-handed alpha
Helix 94	AK4	D	379	389	Right-handed alpha
Helix 95	AK5	D	401	408	Right-handed alpha
Helix 96	AK6	D	409	413	Right-handed 310
Helix 97	AK7	D	470	472	Right-handed 310
Helix 98	AK8	D	473	491	Right-handed alpha
Helix 99	AK9	D	495	503	Right-handed alpha
Helix 100	AL1	D	504	507	Right-handed 310

There are 20 sheets in PDB entry 6PTK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	156	first strand
Strand 2	A	133	138	parallel
Strand 3	A	229	235	parallel
Strand 4	A	39	44	parallel
Strand 5	A	327	332	parallel
Strand 6	A	359	362	anti-parallel
Strand 7	A	72	74	anti-parallel
Strand 8	A	369	371	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	A	375	376	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	199	first strand
Strand 2	A	242	245	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	338	first strand
Strand 2	A	344	345	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	419	426	first strand
Strand 2	A	429	437	anti-parallel
Strand 3	A	441	445	anti-parallel
Strand 4	A	453	456	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	156	first strand
Strand 2	B	133	138	parallel
Strand 3	B	229	235	parallel
Strand 4	B	39	44	parallel
Strand 5	B	327	332	parallel
Strand 6	B	359	362	anti-parallel
Strand 7	B	72	74	anti-parallel
Strand 8	B	369	371	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	B	375	376	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	196	199	first strand
Strand 2	B	242	245	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	338	first strand
Strand 2	B	344	345	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	426	first strand
Strand 2	B	429	437	anti-parallel
Strand 3	B	441	445	anti-parallel
Strand 4	B	453	456	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	153	156	first strand
Strand 2	C	133	138	parallel
Strand 3	C	229	235	parallel
Strand 4	C	39	44	parallel
Strand 5	C	327	332	parallel
Strand 6	C	359	362	anti-parallel
Strand 7	C	72	74	anti-parallel
Strand 8	C	369	371	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	375	376	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	196	199	first strand
Strand 2	C	242	245	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	338	first strand
Strand 2	C	344	345	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	419	426	first strand
Strand 2	C	429	437	anti-parallel
Strand 3	C	441	445	anti-parallel
Strand 4	C	453	456	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	156	first strand
Strand 2	D	133	138	parallel
Strand 3	D	229	235	parallel
Strand 4	D	39	44	parallel
Strand 5	D	327	332	parallel
Strand 6	D	359	362	anti-parallel
Strand 7	D	72	74	anti-parallel
Strand 8	D	369	371	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	375	376	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	196	199	first strand
Strand 2	D	242	245	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	337	338	first strand
Strand 2	D	344	345	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	419	426	first strand
Strand 2	D	429	437	anti-parallel
Strand 3	D	441	445	anti-parallel
Strand 4	D	453	456	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PTK

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PTK