Analysis of interatomic Contacts of Structural Units in PDB entry:
6PTM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PTM entry

There is 1 chain in PDB entry 6PTM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 45GLU 775
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 6PTM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 66Right-handed alpha
Helix 2
AA2
A
70 93Right-handed alpha
Helix 3
AA3
A
93 103Right-handed alpha
Helix 4
AA4
A
104 108Right-handed 310
Helix 5
AA5
A
110 142Right-handed alpha
Helix 6
AA6
A
154 158Right-handed 310
Helix 7
AA7
A
183 188Right-handed alpha
Helix 8
AA8
A
201 203Right-handed 310
Helix 9
AA9
A
211 221Right-handed alpha
Helix 10
AB1
A
237 244Right-handed alpha
Helix 11
AB2
A
245 249Right-handed 310
Helix 12
AB3
A
262 281Right-handed alpha
Helix 13
AB4
A
283 287Right-handed 310
Helix 14
AB5
A
311 327Right-handed alpha
Helix 15
AB6
A
328 337Right-handed alpha
Helix 16
AB7
A
342 346Right-handed 310
Helix 17
AB8
A
353 357Right-handed 310
Helix 18
AB9
A
359 388Right-handed alpha
Helix 19
AC1
A
399 404Right-handed alpha
Helix 20
AC2
A
412 420Right-handed alpha
Helix 21
AC3
A
439 444Right-handed 310
Helix 22
AC4
A
449 463Right-handed alpha
Helix 23
AC5
A
487 501Right-handed alpha
Helix 24
AC6
A
531 534Right-handed 310
Helix 25
AC7
A
535 552Right-handed alpha
Helix 26
AC8
A
552 562Right-handed alpha
Helix 27
AC9
A
571 578Right-handed alpha
Helix 28
AD1
A
580 593Right-handed alpha
Helix 29
AD2
A
603 610Right-handed alpha
Helix 30
AD3
A
626 639Right-handed alpha
Helix 31
AD4
A
675 690Right-handed alpha
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There are 6 sheets in PDB entry 6PTM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 161first strand
Strand 2
A
164 167anti-parallel
Strand 3
A
170 172anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 177first strand
Strand 2
A
505 508parallel
Strand 3
A
468 473parallel
Strand 4
A
423 425parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 199first strand
Strand 2
A
227 232parallel
Strand 3
A
290 294parallel
Strand 4
A
393 396parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
599 602first strand
Strand 2
A
566 569parallel
Strand 3
A
616 619parallel
Strand 4
A
642 645parallel
Strand 5
A
669 672parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
696 702first strand
Strand 2
A
733 739anti-parallel
Strand 3
A
759 762anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
709 717first strand
Strand 2
A
720 727anti-parallel
Strand 3
A
767 774anti-parallel
Strand 4
A
744 749anti-parallel
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