Analysis of interatomic Contacts of Structural Units in PDB entry:
6PTQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PTQ entry

There are 2 chains in PDB entry 6PTQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 9VAL 490
B
 ASP 9VAL 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6PTQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 15Right-handed 310
Helix 2
AA2
A
47 52Right-handed alpha
Helix 3
AA3
A
54 59Right-handed 310
Helix 4
AA4
A
62 67Right-handed alpha
Helix 5
AA5
A
68 74Right-handed alpha
Helix 6
AA6
A
74 82Right-handed alpha
Helix 7
AA7
A
116 130Right-handed alpha
Helix 8
AA8
A
137 154Right-handed alpha
Helix 9
AA9
A
189 193Right-handed 310
Helix 10
AB1
A
194 204Right-handed alpha
Helix 11
AB2
A
242 253Right-handed alpha
Helix 12
AB3
A
283 327Right-handed alpha
Helix 13
AB4
A
340 347Right-handed alpha
Helix 14
AB5
A
369 381Right-handed alpha
Helix 15
AB6
A
393 398Right-handed alpha
Helix 16
AB7
A
399 402Right-handed 310
Helix 17
AB8
A
404 409Right-handed alpha
Helix 18
AB9
A
475 489Right-handed alpha
Helix 19
AC1
B
11 16Right-handed 310
Helix 20
AC2
B
47 52Right-handed alpha
Helix 21
AC3
B
54 59Right-handed alpha
Helix 22
AC4
B
62 67Right-handed alpha
Helix 23
AC5
B
68 73Right-handed alpha
Helix 24
AC6
B
74 82Right-handed alpha
Helix 25
AC7
B
116 130Right-handed alpha
Helix 26
AC8
B
137 154Right-handed alpha
Helix 27
AC9
B
189 193Right-handed 310
Helix 28
AD1
B
194 204Right-handed alpha
Helix 29
AD2
B
242 253Right-handed alpha
Helix 30
AD3
B
283 328Right-handed alpha
Helix 31
AD4
B
332 340Right-handed alpha
Helix 32
AD5
B
340 347Right-handed alpha
Helix 33
AD6
B
369 382Right-handed alpha
Helix 34
AD7
B
393 397Right-handed 310
Helix 35
AD8
B
398 403Right-handed 310
Helix 36
AD9
B
404 409Right-handed alpha
Helix 37
AE1
B
475 489Right-handed alpha
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There are 8 sheets in PDB entry 6PTQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 24first strand
Strand 2
A
217 220anti-parallel
Strand 3
A
39 44anti-parallel
Strand 4
A
29 34anti-parallel
Strand 5
A
103 110anti-parallel
Strand 6
A
91 100anti-parallel
Strand 7
A
83 88anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
169 176anti-parallel
Strand 3
A
157 163anti-parallel
Strand 4
A
267 276anti-parallel
Strand 5
A
256 264anti-parallel
Strand 6
A
206 209anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 365first strand
Strand 2
A
352 356anti-parallel
Strand 3
A
423 428anti-parallel
Strand 4
A
410 415anti-parallel
Strand 5
A
388 391anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 438first strand
Strand 2
A
462 467anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 447first strand
Strand 2
A
454 456anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
217 220anti-parallel
Strand 3
B
39 44anti-parallel
Strand 4
B
29 34anti-parallel
Strand 5
B
103 110anti-parallel
Strand 6
B
91 100anti-parallel
Strand 7
B
83 88anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 209first strand
Strand 2
B
256 263anti-parallel
Strand 3
B
268 276anti-parallel
Strand 4
B
157 163anti-parallel
Strand 5
B
169 176anti-parallel
Strand 6
B
186 188anti-parallel
Strand 7
B
433 438parallel
Strand 8
B
462 467anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
361 365first strand
Strand 2
B
352 356anti-parallel
Strand 3
B
423 428anti-parallel
Strand 4
B
410 415anti-parallel
Strand 5
B
388 391anti-parallel
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