Analysis of interatomic Contacts of Structural Units in PDB entry:
6PTR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PTR entry

There are 10 chains in PDB entry 6PTR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0VAL 373
X
 LEU 5LEU 5
X
 LEU 7LEU 7
X
 PRO 9PRO 9
X
 GLY 11GLY 11
B
 HIS -1VAL 373
Y
 LEU 5LEU 5
Y
 LEU 7LEU 7
Y
 PRO 9PRO 9
Y
 GLY 11GLY 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 6PTR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 19Right-handed alpha
Helix 2
AA2
A
27 30Right-handed 310
Helix 3
AA3
A
71 81Right-handed alpha
Helix 4
AA4
A
114 118Right-handed 310
Helix 5
AA5
A
134 145Right-handed alpha
Helix 6
AA6
A
146 148Right-handed 310
Helix 7
AA7
A
151 157Right-handed 310
Helix 8
AA8
A
203 215Right-handed alpha
Helix 9
AA9
A
250 255Right-handed 310
Helix 10
AB1
A
267 278Right-handed alpha
Helix 11
AB2
A
279 281Right-handed 310
Helix 12
AB3
A
328 338Right-handed alpha
Helix 13
AB4
B
7 19Right-handed alpha
Helix 14
AB5
B
27 30Right-handed 310
Helix 15
AB6
B
71 81Right-handed alpha
Helix 16
AB7
B
114 118Right-handed 310
Helix 17
AB8
B
134 145Right-handed alpha
Helix 18
AB9
B
146 148Right-handed 310
Helix 19
AC1
B
154 157Right-handed 310
Helix 20
AC2
B
203 214Right-handed alpha
Helix 21
AC3
B
250 255Right-handed 310
Helix 22
AC4
B
267 278Right-handed alpha
Helix 23
AC5
B
279 281Right-handed 310
Helix 24
AC6
B
328 338Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6PTR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
2 6anti-parallel
Strand 3
A
86 91anti-parallel
Strand 4
A
99 103anti-parallel
Strand 5
A
106 110anti-parallel
Strand 6
B
307 314anti-parallel
Strand 7
B
296 303anti-parallel
Strand 8
B
287 293anti-parallel
Strand 9
B
322 327anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 70first strand
Strand 2
A
32 38anti-parallel
Strand 3
A
41 47anti-parallel
Strand 4
A
51 58anti-parallel
Strand 5
A
237 242anti-parallel
Strand 6
A
229 234anti-parallel
Strand 7
A
220 225anti-parallel
Strand 8
A
128 133anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 202first strand
Strand 2
A
159 166anti-parallel
Strand 3
A
170 177anti-parallel
Strand 4
A
181 188anti-parallel
Strand 5
A
361 368anti-parallel
Strand 6
A
354 358anti-parallel
Strand 7
A
342 347anti-parallel
Strand 8
A
261 266anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 327first strand
Strand 2
A
287 293anti-parallel
Strand 3
A
296 303anti-parallel
Strand 4
A
307 314anti-parallel
Strand 5
B
106 111anti-parallel
Strand 6
B
98 103anti-parallel
Strand 7
B
86 91anti-parallel
Strand 8
B
2 6anti-parallel
Strand 9
B
61 63anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 70first strand
Strand 2
B
32 38anti-parallel
Strand 3
B
41 47anti-parallel
Strand 4
B
51 58anti-parallel
Strand 5
B
237 242anti-parallel
Strand 6
B
229 234anti-parallel
Strand 7
B
220 225anti-parallel
Strand 8
B
128 133anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 202first strand
Strand 2
B
159 165anti-parallel
Strand 3
B
171 177anti-parallel
Strand 4
B
181 188anti-parallel
Strand 5
B
364 368anti-parallel
Strand 6
B
354 358anti-parallel
Strand 7
B
342 347anti-parallel
Strand 8
B
261 266anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il