Analysis of interatomic Contacts of Structural Units in PDB entry:
6PTV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PTV entry

There are 12 chains in PDB entry 6PTV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 0	VAL 379
B	HIS -1	VAL 379
X	LEU 5	LEU 5
X	LEU 7	LEU 7
X	PRO 9	PRO 9
X	GLY 11	GLY 11
C	HIS 0	VAL 379
Y	LEU 5	LEU 5
Y	LEU 7	LEU 7
Y	PRO 9	PRO 9
Y	GLY 11	GLY 11
D	HIS -1	GLU 140

There are 48 helices in PDB entry 6PTV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	22	Right-handed alpha
Helix 2	AA2	A	72	80	Right-handed alpha
Helix 3	AA3	A	112	116	Right-handed 310
Helix 4	AA4	A	132	141	Right-handed alpha
Helix 5	AA5	A	142	146	Right-handed 310
Helix 6	AA6	A	149	155	Right-handed 310
Helix 7	AA7	A	197	209	Right-handed alpha
Helix 8	AA8	A	247	252	Right-handed 310
Helix 9	AA9	A	264	276	Right-handed alpha
Helix 10	AB1	A	315	318	Right-handed 310
Helix 11	AB2	A	333	344	Right-handed alpha
Helix 12	AB3	B	8	22	Right-handed alpha
Helix 13	AB4	B	72	80	Right-handed alpha
Helix 14	AB5	B	93	95	Right-handed 310
Helix 15	AB6	B	112	116	Right-handed 310
Helix 16	AB7	B	132	141	Right-handed alpha
Helix 17	AB8	B	142	146	Right-handed 310
Helix 18	AB9	B	152	155	Right-handed 310
Helix 19	AC1	B	197	209	Right-handed alpha
Helix 20	AC2	B	247	252	Right-handed 310
Helix 21	AC3	B	264	276	Right-handed alpha
Helix 22	AC4	B	315	318	Right-handed 310
Helix 23	AC5	B	333	344	Right-handed alpha
Helix 24	AC6	C	8	22	Right-handed alpha
Helix 25	AC7	C	72	80	Right-handed alpha
Helix 26	AC8	C	93	95	Right-handed 310
Helix 27	AC9	C	112	116	Right-handed 310
Helix 28	AD1	C	132	141	Right-handed alpha
Helix 29	AD2	C	142	146	Right-handed 310
Helix 30	AD3	C	152	155	Right-handed 310
Helix 31	AD4	C	197	209	Right-handed alpha
Helix 32	AD5	C	247	252	Right-handed 310
Helix 33	AD6	C	264	276	Right-handed alpha
Helix 34	AD7	C	315	318	Right-handed 310
Helix 35	AD8	C	333	344	Right-handed alpha
Helix 36	AD9	D	8	22	Right-handed alpha
Helix 37	AE1	D	28	31	Right-handed 310
Helix 38	AE2	D	72	80	Right-handed alpha
Helix 39	AE3	D	93	95	Right-handed 310
Helix 40	AE4	D	112	116	Right-handed 310
Helix 41	AE5	D	132	141	Right-handed alpha
Helix 42	AE6	D	142	146	Right-handed 310
Helix 43	AE7	D	149	155	Right-handed 310
Helix 44	AE8	D	197	209	Right-handed alpha
Helix 45	AE9	D	247	252	Right-handed 310
Helix 46	AF1	D	264	276	Right-handed alpha
Helix 47	AF2	D	315	318	Right-handed 310
Helix 48	AF3	D	333	344	Right-handed alpha

There are 12 sheets in PDB entry 6PTV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	64	first strand
Strand 2	A	3	7	anti-parallel
Strand 3	A	86	91	anti-parallel
Strand 4	A	97	100	anti-parallel
Strand 5	A	104	108	anti-parallel
Strand 6	B	304	311	anti-parallel
Strand 7	B	293	300	anti-parallel
Strand 8	B	285	289	anti-parallel
Strand 9	B	328	332	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	71	first strand
Strand 2	A	33	39	anti-parallel
Strand 3	A	42	48	anti-parallel
Strand 4	A	52	59	anti-parallel
Strand 5	A	234	239	anti-parallel
Strand 6	A	225	230	anti-parallel
Strand 7	A	216	221	anti-parallel
Strand 8	A	126	131	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	196	first strand
Strand 2	A	157	163	anti-parallel
Strand 3	A	166	172	anti-parallel
Strand 4	A	176	183	anti-parallel
Strand 5	A	367	374	anti-parallel
Strand 6	A	360	364	anti-parallel
Strand 7	A	348	353	anti-parallel
Strand 8	A	258	263	anti-parallel
Strand 9	A	320	322	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	332	first strand
Strand 2	A	285	289	anti-parallel
Strand 3	A	293	300	anti-parallel
Strand 4	A	304	311	anti-parallel
Strand 5	B	104	108	anti-parallel
Strand 6	B	97	100	anti-parallel
Strand 7	B	86	91	anti-parallel
Strand 8	B	3	7	anti-parallel
Strand 9	B	61	64	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	71	first strand
Strand 2	B	33	39	anti-parallel
Strand 3	B	42	48	anti-parallel
Strand 4	B	52	59	anti-parallel
Strand 5	B	234	239	anti-parallel
Strand 6	B	225	230	anti-parallel
Strand 7	B	216	221	anti-parallel
Strand 8	B	126	131	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	196	first strand
Strand 2	B	157	163	anti-parallel
Strand 3	B	166	172	anti-parallel
Strand 4	B	176	183	anti-parallel
Strand 5	B	367	374	anti-parallel
Strand 6	B	360	364	anti-parallel
Strand 7	B	348	353	anti-parallel
Strand 8	B	258	263	anti-parallel
Strand 9	B	320	322	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	64	first strand
Strand 2	C	3	7	anti-parallel
Strand 3	C	86	91	anti-parallel
Strand 4	C	97	100	anti-parallel
Strand 5	C	104	108	anti-parallel
Strand 6	D	304	311	anti-parallel
Strand 7	D	293	300	anti-parallel
Strand 8	D	285	289	anti-parallel
Strand 9	D	328	332	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	71	first strand
Strand 2	C	33	39	anti-parallel
Strand 3	C	42	48	anti-parallel
Strand 4	C	52	59	anti-parallel
Strand 5	C	234	239	anti-parallel
Strand 6	C	225	230	anti-parallel
Strand 7	C	216	221	anti-parallel
Strand 8	C	126	131	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	196	first strand
Strand 2	C	157	163	anti-parallel
Strand 3	C	166	172	anti-parallel
Strand 4	C	176	183	anti-parallel
Strand 5	C	367	374	anti-parallel
Strand 6	C	360	364	anti-parallel
Strand 7	C	348	353	anti-parallel
Strand 8	C	258	263	anti-parallel
Strand 9	C	320	322	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	332	first strand
Strand 2	C	285	289	anti-parallel
Strand 3	C	293	300	anti-parallel
Strand 4	C	304	311	anti-parallel
Strand 5	D	104	108	anti-parallel
Strand 6	D	97	100	anti-parallel
Strand 7	D	86	91	anti-parallel
Strand 8	D	3	7	anti-parallel
Strand 9	D	61	64	anti-parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	71	first strand
Strand 2	D	33	39	anti-parallel
Strand 3	D	42	48	anti-parallel
Strand 4	D	52	59	anti-parallel
Strand 5	D	234	239	anti-parallel
Strand 6	D	225	230	anti-parallel
Strand 7	D	216	221	anti-parallel
Strand 8	D	126	131	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	196	first strand
Strand 2	D	157	163	anti-parallel
Strand 3	D	166	172	anti-parallel
Strand 4	D	176	183	anti-parallel
Strand 5	D	367	374	anti-parallel
Strand 6	D	360	364	anti-parallel
Strand 7	D	348	353	anti-parallel
Strand 8	D	258	263	anti-parallel
Strand 9	D	320	322	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PTV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PTV