Analysis of interatomic Contacts of Structural Units in PDB entry:
6PUB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PUB entry

There is 1 chain in PDB entry 6PUB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ALA 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6PUB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-1 4Right-handed 310
Helix 2
AA2
A
14 16Right-handed 310
Helix 3
AA3
A
32 36Right-handed 310
Helix 4
AA4
A
38 41Right-handed 310
Helix 5
AA5
A
87 91Right-handed 310
Helix 6
AA6
A
93 97Right-handed 310
Helix 7
AA7
A
164 175Right-handed alpha
Helix 8
AA8
A
176 179Right-handed 310
Helix 9
AA9
A
180 187Right-handed alpha
Helix 10
AB1
A
187 192Right-handed alpha
Helix 11
AB2
A
195 207Right-handed alpha
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There are 3 sheets in PDB entry 6PUB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
29 30anti-parallel
Strand 3
A
63 64parallel
Strand 4
A
116 117parallel
Strand 5
A
134 135parallel
Strand 6
A
149 152parallel
Strand 7
A
157 161anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 24first strand
Strand 2
A
56 58parallel
Strand 3
A
109 111parallel
Strand 4
A
128 129parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 44first strand
Strand 2
A
69 71parallel
Strand 3
A
122 123parallel
Strand 4
A
140 141parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il