Analysis of interatomic Contacts of Structural Units in PDB entry:
6PUY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PUY entry

There are 6 chains in PDB entry 6PUY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 1ILE 268
B
 PHE 1ASP 270
C
 GLU 212GLY 277
D
 ASN 222ILE 268
E
 A 15 G 33
F
 C 5 DA 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6PUY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 11Right-handed alpha
Helix 2
AA2
A
11 16Right-handed alpha
Helix 3
AA3
A
18 26Right-handed alpha
Helix 4
AA4
A
29 40Right-handed alpha
Helix 5
AA5
A
41 44Right-handed 310
Helix 6
AA6
A
93 107Right-handed alpha
Helix 7
AA7
A
118 123Right-handed alpha
Helix 8
AA8
A
123 134Right-handed alpha
Helix 9
AA9
A
144 147Right-handed 310
Helix 10
AB1
A
148 166Right-handed alpha
Helix 11
AB2
A
167 169Right-handed 310
Helix 12
AB3
A
171 186Right-handed alpha
Helix 13
AB4
A
195 221Right-handed alpha
Helix 14
AB5
B
2 16Right-handed alpha
Helix 15
AB6
B
18 26Right-handed alpha
Helix 16
AB7
B
29 39Right-handed alpha
Helix 17
AB8
B
93 108Right-handed alpha
Helix 18
AB9
B
123 134Right-handed alpha
Helix 19
AC1
B
150 166Right-handed alpha
Helix 20
AC2
B
167 169Right-handed 310
Helix 21
AC3
B
171 186Right-handed alpha
Helix 22
AC4
B
195 221Right-handed alpha
Helix 23
AC5
C
213 221Right-handed alpha
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There are 6 sheets in PDB entry 6PUY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
71 78anti-parallel
Strand 3
A
60 68anti-parallel
Strand 4
A
112 115parallel
Strand 5
A
136 139parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 261first strand
Strand 2
A
248 252anti-parallel
Strand 3
A
238 245anti-parallel
Strand 4
A
224 227anti-parallel
Strand 5
A
265 267anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 89first strand
Strand 2
B
71 78anti-parallel
Strand 3
B
60 68anti-parallel
Strand 4
B
112 114parallel
Strand 5
B
136 138parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
256 261first strand
Strand 2
B
248 253anti-parallel
Strand 3
B
238 244anti-parallel
Strand 4
B
223 227anti-parallel
Strand 5
B
265 269anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
256 261first strand
Strand 2
C
248 253anti-parallel
Strand 3
C
239 244anti-parallel
Strand 4
C
224 227anti-parallel
Strand 5
C
265 268anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
256 261first strand
Strand 2
D
248 253anti-parallel
Strand 3
D
236 244anti-parallel
Strand 4
D
224 227anti-parallel
Strand 5
D
265 268anti-parallel
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