Analysis of interatomic Contacts of Structural Units in PDB entry:
6PUZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PUZ entry

There are 6 chains in PDB entry 6PUZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 1ARG 269
B
 ASP 3ASP 270
C
 LEU 213GLY 277
D
 ASN 222ARG 269
E
 A 15 G 33
F
 C 5 DA 21
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 6PUZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 16Right-handed alpha
Helix 2
AA2
A
18 26Right-handed alpha
Helix 3
AA3
A
30 39Right-handed alpha
Helix 4
AA4
A
93 108Right-handed alpha
Helix 5
AA5
A
118 123Right-handed alpha
Helix 6
AA6
A
123 134Right-handed alpha
Helix 7
AA7
A
144 147Right-handed 310
Helix 8
AA8
A
148 166Right-handed alpha
Helix 9
AA9
A
171 186Right-handed alpha
Helix 10
AB1
A
195 219Right-handed alpha
Helix 11
AB2
B
4 16Right-handed alpha
Helix 12
AB3
B
18 26Right-handed alpha
Helix 13
AB4
B
29 40Right-handed alpha
Helix 14
AB5
B
41 44Right-handed 310
Helix 15
AB6
B
93 108Right-handed alpha
Helix 16
AB7
B
123 134Right-handed alpha
Helix 17
AB8
B
151 166Right-handed alpha
Helix 18
AB9
B
167 169Right-handed 310
Helix 19
AC1
B
171 186Right-handed alpha
Helix 20
AC2
B
196 221Right-handed alpha
Helix 21
AC3
C
214 221Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 6PUZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
72 77anti-parallel
Strand 3
A
60 66anti-parallel
Strand 4
A
112 115parallel
Strand 5
A
136 139parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
224 227first strand
Strand 2
A
265 268anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 244first strand
Strand 2
A
248 253anti-parallel
Strand 3
A
256 261anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 89first strand
Strand 2
B
71 78anti-parallel
Strand 3
B
60 68anti-parallel
Strand 4
B
112 114parallel
Strand 5
B
136 138parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 189first strand
Strand 2
B
194 195anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 227first strand
Strand 2
B
265 269anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 244first strand
Strand 2
B
248 253anti-parallel
Strand 3
B
256 261anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
256 261first strand
Strand 2
C
248 253anti-parallel
Strand 3
C
236 244anti-parallel
Strand 4
C
224 227anti-parallel
Strand 5
C
265 268anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
256 261first strand
Strand 2
D
248 253anti-parallel
Strand 3
D
236 244anti-parallel
Strand 4
D
224 227anti-parallel
Strand 5
D
265 268anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il