Analysis of interatomic Contacts of Structural Units in PDB entry:
6PV4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PV4 entry

There are 4 chains in PDB entry 6PV4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 38	GLN 649
B	PHE 38	LEU 651
C	PHE 38	LEU 651
D	PHE 38	MET 647

There are 92 helices in PDB entry 6PV4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	70	84	Right-handed alpha
Helix 2	AA2	A	110	120	Right-handed alpha
Helix 3	AA3	A	124	130	Right-handed alpha
Helix 4	AA4	A	149	165	Right-handed alpha
Helix 5	AA5	A	199	211	Right-handed alpha
Helix 6	AA6	A	225	229	Right-handed 310
Helix 7	AA7	A	237	255	Right-handed alpha
Helix 8	AA8	A	274	294	Right-handed alpha
Helix 9	AA9	A	314	332	Right-handed alpha
Helix 10	AB1	A	355	362	Right-handed alpha
Helix 11	AB2	A	382	394	Right-handed alpha
Helix 12	AB3	A	423	428	Right-handed alpha
Helix 13	AB4	A	433	437	Right-handed 310
Helix 14	AB5	A	447	450	Right-handed 310
Helix 15	AB6	A	451	464	Right-handed alpha
Helix 16	AB7	A	468	486	Right-handed alpha
Helix 17	AB8	A	491	502	Right-handed alpha
Helix 18	AB9	A	521	527	Right-handed alpha
Helix 19	AC1	A	544	563	Right-handed alpha
Helix 20	AC2	A	566	573	Right-handed alpha
Helix 21	AC3	A	573	593	Right-handed alpha
Helix 22	AC4	A	603	619	Right-handed alpha
Helix 23	AC5	A	639	649	Right-handed alpha
Helix 24	AC6	B	70	84	Right-handed alpha
Helix 25	AC7	B	110	120	Right-handed alpha
Helix 26	AC8	B	125	130	Right-handed alpha
Helix 27	AC9	B	149	165	Right-handed alpha
Helix 28	AD1	B	199	211	Right-handed alpha
Helix 29	AD2	B	225	229	Right-handed 310
Helix 30	AD3	B	237	255	Right-handed alpha
Helix 31	AD4	B	274	294	Right-handed alpha
Helix 32	AD5	B	314	332	Right-handed alpha
Helix 33	AD6	B	355	362	Right-handed alpha
Helix 34	AD7	B	382	394	Right-handed alpha
Helix 35	AD8	B	423	428	Right-handed alpha
Helix 36	AD9	B	433	437	Right-handed 310
Helix 37	AE1	B	447	450	Right-handed 310
Helix 38	AE2	B	451	464	Right-handed alpha
Helix 39	AE3	B	468	486	Right-handed alpha
Helix 40	AE4	B	491	502	Right-handed alpha
Helix 41	AE5	B	522	533	Right-handed alpha
Helix 42	AE6	B	540	563	Right-handed alpha
Helix 43	AE7	B	566	573	Right-handed alpha
Helix 44	AE8	B	573	593	Right-handed alpha
Helix 45	AE9	B	601	619	Right-handed alpha
Helix 46	AF1	B	639	651	Right-handed alpha
Helix 47	AF2	C	70	84	Right-handed alpha
Helix 48	AF3	C	110	120	Right-handed alpha
Helix 49	AF4	C	124	130	Right-handed alpha
Helix 50	AF5	C	149	165	Right-handed alpha
Helix 51	AF6	C	199	211	Right-handed alpha
Helix 52	AF7	C	225	229	Right-handed 310
Helix 53	AF8	C	237	255	Right-handed alpha
Helix 54	AF9	C	274	294	Right-handed alpha
Helix 55	AG1	C	314	332	Right-handed alpha
Helix 56	AG2	C	355	362	Right-handed alpha
Helix 57	AG3	C	382	394	Right-handed alpha
Helix 58	AG4	C	423	428	Right-handed alpha
Helix 59	AG5	C	433	437	Right-handed 310
Helix 60	AG6	C	447	450	Right-handed 310
Helix 61	AG7	C	451	464	Right-handed alpha
Helix 62	AG8	C	468	486	Right-handed alpha
Helix 63	AG9	C	491	502	Right-handed alpha
Helix 64	AH1	C	522	533	Right-handed alpha
Helix 65	AH2	C	539	563	Right-handed alpha
Helix 66	AH3	C	566	573	Right-handed alpha
Helix 67	AH4	C	573	593	Right-handed alpha
Helix 68	AH5	C	601	619	Right-handed alpha
Helix 69	AH6	C	639	651	Right-handed alpha
Helix 70	AH7	D	70	84	Right-handed alpha
Helix 71	AH8	D	110	120	Right-handed alpha
Helix 72	AH9	D	124	130	Right-handed alpha
Helix 73	AI1	D	149	165	Right-handed alpha
Helix 74	AI2	D	199	211	Right-handed alpha
Helix 75	AI3	D	225	229	Right-handed 310
Helix 76	AI4	D	237	255	Right-handed alpha
Helix 77	AI5	D	274	294	Right-handed alpha
Helix 78	AI6	D	314	332	Right-handed alpha
Helix 79	AI7	D	355	362	Right-handed alpha
Helix 80	AI8	D	382	394	Right-handed alpha
Helix 81	AI9	D	423	428	Right-handed alpha
Helix 82	AJ1	D	433	437	Right-handed 310
Helix 83	AJ2	D	447	450	Right-handed 310
Helix 84	AJ3	D	451	464	Right-handed alpha
Helix 85	AJ4	D	468	486	Right-handed alpha
Helix 86	AJ5	D	491	502	Right-handed alpha
Helix 87	AJ6	D	521	532	Right-handed alpha
Helix 88	AJ7	D	541	563	Right-handed alpha
Helix 89	AJ8	D	566	573	Right-handed alpha
Helix 90	AJ9	D	573	593	Right-handed alpha
Helix 91	AK1	D	601	619	Right-handed alpha
Helix 92	AK2	D	639	646	Right-handed alpha

There are 15 sheets in PDB entry 6PV4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	49	first strand
Strand 2	A	176	182	anti-parallel
Strand 3	A	131	139	anti-parallel
Strand 4	A	142	147	anti-parallel
Strand 5	A	100	105	parallel
Strand 6	A	60	65	parallel
Strand 7	A	87	91	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	56	first strand
Strand 2	A	172	174	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	191	first strand
Strand 2	A	217	220	parallel
Strand 3	A	258	262	parallel
Strand 4	A	300	303	parallel
Strand 5	A	342	345	parallel
Strand 6	A	368	372	parallel
Strand 7	A	404	407	parallel
Strand 8	A	439	442	parallel
Strand 9	A	186	191	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	623	626	first strand
Strand 2	A	629	632	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	49	first strand
Strand 2	B	176	182	anti-parallel
Strand 3	B	131	139	anti-parallel
Strand 4	B	142	147	anti-parallel
Strand 5	B	100	105	parallel
Strand 6	B	60	65	parallel
Strand 7	B	87	90	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	56	first strand
Strand 2	B	172	174	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	191	first strand
Strand 2	B	217	220	parallel
Strand 3	B	258	262	parallel
Strand 4	B	300	303	parallel
Strand 5	B	342	345	parallel
Strand 6	B	368	372	parallel
Strand 7	B	404	407	parallel
Strand 8	B	439	442	parallel
Strand 9	B	186	191	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	623	625	first strand
Strand 2	B	630	632	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	56	first strand
Strand 2	C	172	182	anti-parallel
Strand 3	C	131	139	anti-parallel
Strand 4	C	142	147	anti-parallel
Strand 5	C	99	105	parallel
Strand 6	C	60	65	parallel
Strand 7	C	87	90	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	191	first strand
Strand 2	C	217	220	parallel
Strand 3	C	258	262	parallel
Strand 4	C	300	303	parallel
Strand 5	C	342	345	parallel
Strand 6	C	368	372	parallel
Strand 7	C	404	407	parallel
Strand 8	C	439	442	parallel
Strand 9	C	186	191	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	623	625	first strand
Strand 2	C	630	632	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	49	first strand
Strand 2	D	176	182	anti-parallel
Strand 3	D	131	139	anti-parallel
Strand 4	D	142	147	anti-parallel
Strand 5	D	99	105	parallel
Strand 6	D	60	65	parallel
Strand 7	D	87	90	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	56	first strand
Strand 2	D	172	174	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	191	first strand
Strand 2	D	217	220	parallel
Strand 3	D	258	262	parallel
Strand 4	D	300	303	parallel
Strand 5	D	342	345	parallel
Strand 6	D	368	372	parallel
Strand 7	D	404	407	parallel
Strand 8	D	439	442	parallel
Strand 9	D	186	191	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	623	626	first strand
Strand 2	D	629	632	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PV4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PV4