Analysis of interatomic Contacts of Structural Units in PDB entry:
6PV5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PV5 entry

There is 1 chain in PDB entry 6PV5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 16HIS 597
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6PV5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 60Right-handed alpha
Helix 2
AA2
A
84 88Right-handed 310
Helix 3
AA3
A
89 96Right-handed alpha
Helix 4
AA4
A
128 141Right-handed alpha
Helix 5
AA5
A
178 192Right-handed alpha
Helix 6
AA6
A
204 208Right-handed 310
Helix 7
AA7
A
216 218Right-handed 310
Helix 8
AA8
A
219 233Right-handed alpha
Helix 9
AA9
A
242 246Right-handed 310
Helix 10
AB1
A
250 272Right-handed alpha
Helix 11
AB2
A
287 302Right-handed alpha
Helix 12
AB3
A
303 306Right-handed 310
Helix 13
AB4
A
320 323Right-handed 310
Helix 14
AB5
A
331 341Right-handed alpha
Helix 15
AB6
A
361 373Right-handed alpha
Helix 16
AB7
A
403 406Right-handed 310
Helix 17
AB8
A
419 421Right-handed 310
Helix 18
AB9
A
422 435Right-handed alpha
Helix 19
AC1
A
440 454Right-handed alpha
Helix 20
AC2
A
456 465Right-handed alpha
Helix 21
AC3
A
477 493Right-handed alpha
Helix 22
AC4
A
497 522Right-handed alpha
Helix 23
AC5
A
524 557Right-handed alpha
Helix 24
AC6
A
559 579Right-handed alpha
Helix 25
AC7
A
588 597Right-handed alpha
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There are 4 sheets in PDB entry 6PV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
A
155 159anti-parallel
Strand 3
A
109 114anti-parallel
Strand 4
A
121 126anti-parallel
Strand 5
A
79 83parallel
Strand 6
A
41 42parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 144first strand
Strand 2
A
151 152anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 169first strand
Strand 2
A
196 199parallel
Strand 3
A
236 241parallel
Strand 4
A
275 279parallel
Strand 5
A
313 315parallel
Strand 6
A
346 349parallel
Strand 7
A
376 380parallel
Strand 8
A
408 413parallel
Strand 9
A
165 169parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
329 330anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il