Analysis of interatomic Contacts of Structural Units in PDB entry:
6PV8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PV8 entry

There are 9 chains in PDB entry 6PV8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	MET 469
B	ARG 1	PRO 459
C	ASN 4	PRO 459
D	SER 1	MET 469
E	ARG 1	PRO 459
F	VAL 21	VAL 137
G	GLN 23	LEU 127
H	VAL 21	VAL 137
I	GLN 23	LEU 127

There are 50 helices in PDB entry 6PV8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	12	Right-handed alpha
Helix 2	AA2	A	218	226	Right-handed alpha
Helix 3	AA3	A	227	228	Right-handed 310
Helix 4	AA4	A	229	234	Right-handed 310
Helix 5	AA5	A	240	263	Right-handed alpha
Helix 6	AA6	A	271	299	Right-handed alpha
Helix 7	AA7	A	309	314	Right-handed alpha
Helix 8	AA8	A	411	463	Right-handed alpha
Helix 9	AA9	B	4	14	Right-handed alpha
Helix 10	AB1	B	211	228	Right-handed alpha
Helix 11	AB2	B	241	264	Right-handed alpha
Helix 12	AB3	B	272	298	Right-handed alpha
Helix 13	AB4	B	299	301	Right-handed 310
Helix 14	AB5	B	309	316	Right-handed alpha
Helix 15	AB6	B	319	324	Right-handed alpha
Helix 16	AB7	B	401	457	Right-handed alpha
Helix 17	AB8	C	5	14	Right-handed alpha
Helix 18	AB9	C	85	89	Right-handed 310
Helix 19	AC1	C	211	219	Right-handed alpha
Helix 20	AC2	C	219	225	Right-handed alpha
Helix 21	AC3	C	241	264	Right-handed alpha
Helix 22	AC4	C	272	298	Right-handed alpha
Helix 23	AC5	C	299	301	Right-handed 310
Helix 24	AC6	C	309	316	Right-handed alpha
Helix 25	AC7	C	319	324	Right-handed alpha
Helix 26	AC8	C	401	457	Right-handed alpha
Helix 27	AC9	D	2	12	Right-handed alpha
Helix 28	AD1	D	68	72	Right-handed 310
Helix 29	AD2	D	218	225	Right-handed alpha
Helix 30	AD3	D	226	228	Right-handed 310
Helix 31	AD4	D	230	234	Right-handed 310
Helix 32	AD5	D	240	263	Right-handed alpha
Helix 33	AD6	D	271	299	Right-handed alpha
Helix 34	AD7	D	309	314	Right-handed alpha
Helix 35	AD8	D	317	323	Right-handed alpha
Helix 36	AD9	D	411	464	Right-handed alpha
Helix 37	AE1	D	464	469	Right-handed alpha
Helix 38	AE2	E	4	14	Right-handed alpha
Helix 39	AE3	E	85	89	Right-handed 310
Helix 40	AE4	E	211	218	Right-handed alpha
Helix 41	AE5	E	218	230	Right-handed alpha
Helix 42	AE6	E	241	264	Right-handed alpha
Helix 43	AE7	E	272	298	Right-handed alpha
Helix 44	AE8	E	309	316	Right-handed alpha
Helix 45	AE9	E	318	324	Right-handed alpha
Helix 46	AF1	E	401	457	Right-handed alpha
Helix 47	AF2	F	106	110	Right-handed 310
Helix 48	AF3	H	81	84	Right-handed 310
Helix 49	AF4	H	106	110	Right-handed 310
Helix 50	AF5	I	100	104	Right-handed 310

There are 31 sheets in PDB entry 6PV8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	81	first strand
Strand 2	A	107	111	anti-parallel
Strand 3	A	115	118	anti-parallel
Strand 4	A	49	61	anti-parallel
Strand 5	A	121	126	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	81	first strand
Strand 2	A	107	111	anti-parallel
Strand 3	A	115	118	anti-parallel
Strand 4	A	49	61	anti-parallel
Strand 5	A	29	44	anti-parallel
Strand 6	A	156	160	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	146	first strand
Strand 2	A	196	208	anti-parallel
Strand 3	A	176	180	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	146	first strand
Strand 2	A	196	208	anti-parallel
Strand 3	A	183	189	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	85	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	119	122	anti-parallel
Strand 4	B	53	65	anti-parallel
Strand 5	B	125	130	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	85	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	119	122	anti-parallel
Strand 4	B	53	65	anti-parallel
Strand 5	B	36	48	anti-parallel
Strand 6	B	163	164	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	96	first strand
Strand 2	B	143	152	anti-parallel
Strand 3	B	201	209	anti-parallel
Strand 4	B	180	184	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	96	first strand
Strand 2	B	143	152	anti-parallel
Strand 3	B	201	209	anti-parallel
Strand 4	B	187	189	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	114	first strand
Strand 2	C	119	122	anti-parallel
Strand 3	C	61	65	anti-parallel
Strand 4	C	33	38	anti-parallel
Strand 5	C	160	164	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	41	48	first strand
Strand 2	C	53	58	anti-parallel
Strand 3	C	126	131	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	96	first strand
Strand 2	C	143	152	anti-parallel
Strand 3	C	201	209	anti-parallel
Strand 4	C	180	184	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	96	first strand
Strand 2	C	143	152	anti-parallel
Strand 3	C	201	209	anti-parallel
Strand 4	C	187	189	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	110	first strand
Strand 2	D	116	118	anti-parallel
Strand 3	D	49	60	anti-parallel
Strand 4	D	121	126	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	110	first strand
Strand 2	D	116	118	anti-parallel
Strand 3	D	49	60	anti-parallel
Strand 4	D	29	44	anti-parallel
Strand 5	D	156	160	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	147	first strand
Strand 2	D	196	208	anti-parallel
Strand 3	D	176	180	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	147	first strand
Strand 2	D	196	208	anti-parallel
Strand 3	D	183	189	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	84	first strand
Strand 2	E	112	114	anti-parallel
Strand 3	E	119	122	anti-parallel
Strand 4	E	53	65	anti-parallel
Strand 5	E	126	131	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	82	84	first strand
Strand 2	E	112	114	anti-parallel
Strand 3	E	119	122	anti-parallel
Strand 4	E	53	65	anti-parallel
Strand 5	E	33	48	anti-parallel
Strand 6	E	160	164	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	96	first strand
Strand 2	E	143	152	anti-parallel
Strand 3	E	199	209	anti-parallel
Strand 4	E	180	184	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	96	first strand
Strand 2	E	143	152	anti-parallel
Strand 3	E	199	209	anti-parallel
Strand 4	E	187	191	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	22	25	first strand
Strand 2	F	37	44	anti-parallel
Strand 3	F	97	102	anti-parallel
Strand 4	F	88	90	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	30	first strand
Strand 2	F	133	136	parallel
Strand 3	F	111	119	anti-parallel
Strand 4	F	51	58	anti-parallel
Strand 5	F	64	70	anti-parallel
Strand 6	F	77	79	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	30	first strand
Strand 2	F	133	136	parallel
Strand 3	F	111	119	anti-parallel
Strand 4	F	128	129	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	27	29	first strand
Strand 2	G	41	46	anti-parallel
Strand 3	G	91	96	anti-parallel
Strand 4	G	83	88	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	32	34	first strand
Strand 2	G	123	126	parallel
Strand 3	G	105	110	anti-parallel
Strand 4	G	55	59	anti-parallel
Strand 5	G	66	70	anti-parallel
Strand 6	G	74	75	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	22	25	first strand
Strand 2	H	37	44	anti-parallel
Strand 3	H	97	102	anti-parallel
Strand 4	H	87	90	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	30	first strand
Strand 2	H	133	136	parallel
Strand 3	H	111	119	anti-parallel
Strand 4	H	51	58	anti-parallel
Strand 5	H	65	70	anti-parallel
Strand 6	H	78	79	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	29	30	first strand
Strand 2	H	133	136	parallel
Strand 3	H	111	119	anti-parallel
Strand 4	H	128	129	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	27	29	first strand
Strand 2	I	41	46	anti-parallel
Strand 3	I	91	96	anti-parallel
Strand 4	I	83	88	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	32	34	first strand
Strand 2	I	123	126	parallel
Strand 3	I	105	111	anti-parallel
Strand 4	I	55	59	anti-parallel
Strand 5	I	66	70	anti-parallel
Strand 6	I	74	75	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	32	34	first strand
Strand 2	I	123	126	parallel
Strand 3	I	105	111	anti-parallel
Strand 4	I	118	119	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PV8

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PV8